Protein Info for LRK54_RS05935 in Rhodanobacter denitrificans FW104-10B01

Annotation: DUF3617 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 192 signal peptide" amino acids 1 to 49 (49 residues), see Phobius details amino acids 64 to 65 (2 residues), see Phobius details transmembrane" amino acids 50 to 63 (14 residues), see Phobius details PF12276: DUF3617" amino acids 77 to 183 (107 residues), 29.1 bits, see alignment E=7.6e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (192 amino acids)

>LRK54_RS05935 DUF3617 domain-containing protein (Rhodanobacter denitrificans FW104-10B01)
MPLTDERAGSGSQRGCNGCDRRGRASARRRRVSRSSRRMPMHVSSILRRFGLGAFTLWTT
MALAQSGSANMMTMTVTMKMQVSGAGDLPARTTTQEVCASTDHDMRAMLQHQQKCVVSDY
RQLGSVISYHLVCGGNPPTMTGDARFELLPNDDIRGSVHANSNMGGQSVVMDMTYAGRRT
GSCDYGASRQRR