Protein Info for LRK54_RS04840 in Rhodanobacter denitrificans FW104-10B01

Annotation: pilus assembly protein PilY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1104 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF05567: Neisseria_PilC" amino acids 667 to 868 (202 residues), 30 bits, see alignment E=1.4e-11

Best Hits

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1104 amino acids)

>LRK54_RS04840 pilus assembly protein PilY (Rhodanobacter denitrificans FW104-10B01)
MSHARSNLNRRLRIFALIAAALTLPGMASGEDIDLYTGNAINGGQPNVLLVMDNAANGNS
ATTIAPGSNCPTWIASNPKAHDFEACALYNMIGSIGAPTSALNGQVNMGLMMFNGANGGL
FFYPNPSPTPPGPLPLLDTTRAATFQSAIAGTPGGGTGPGTAAVSTNSNNLDESMEEAWA
FFTGTTGLSGTKYTTPINNACQKNFIIYLANVSGSNAPKTANSVTSAQTTLATAMGVPAS
TNPMSPPMIPLNPTGDQQNWGDEWAKFMYQSDLSGISASVEHNPQNIITYTIAVSNGCEA
TQQKCVDHINLIKSMAANGGGKYFYVSAGDVSGLIEALTTILNEVQATNSVFASVSLPVA
VNAQGTSLNQVYVGMFRPDATAAPRWAGNLKQYQLGYDSNNDVVLDDSLGNPAISNAGTG
FISPTALSFWTADHQTGTPRDGPFTITASGYSSSIVANWPTNGFWVNHSTGAGGAFDAPD
GEVVDKGGVAAMIRADYLTDQSTRVIYTCTSVGGCPTSGTLPTFDATTLAGNSLFGTSST
TTPTTTDLINWIRGTDNNTGTGAESPAGPGSPVTVRPSVHGDVLHSRPAVVNYGGSIGIV
AFYGSNDGLFHAVNGNKDATAPGVIKMTSGRLVRPGGELWSFIAPNFFSRFQRLYNNSPL
LTLGAASGSGKPYFFDGTTTVYQDLRNAASPKTYIYVTARRGGRLIYAFDVSDPLQPPIF
LWSKTNADIPELGQTWSQPKLALVKGHTDLSSGNPIPVVVMGGGYDTAEDTDPVATADTM
GRAIVVLDAFNGSTVWSACPSGCTAAVPGMTYAIPSDITLLDRNGDGYTDRLYTGDLGGN
IWRVDVDDTSPANWQVTKLASLRTTGTGTGSACATNPTGARKFFYPPDVTPTSSFDAVVA
ASGDREHPLATNASSCVVNRFYMLKDTNTGTSVATGWTTITQAMLTNETGAAAGTTPPYS
STSTTSGFYVTLTHSGEKAVNAPLTVAGYTYFGTNTPADPKLNPSMCYPNLGIARGYAID
FRTGAGQNSNGYIVFDGGGLPPSPVFGLVEVNPGSGVYTPVLIGGGNQTGTGGGNNSSAL
GAQKVTPPNTGKRKRTYWFTEGLR