Protein Info for LRK54_RS04460 in Rhodanobacter denitrificans FW104-10B01

Annotation: tetratricopeptide repeat-containing sulfotransferase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 679 PF13429: TPR_15" amino acids 43 to 304 (262 residues), 29.7 bits, see alignment E=3.9e-10 PF13174: TPR_6" amino acids 45 to 75 (31 residues), 13.4 bits, see alignment (E = 9.3e-05) amino acids 254 to 277 (24 residues), 15.7 bits, see alignment (E = 1.8e-05) PF13432: TPR_16" amino acids 49 to 111 (63 residues), 26.2 bits, see alignment E=8.4e-09 amino acids 81 to 140 (60 residues), 19.7 bits, see alignment 9e-07 amino acids 182 to 245 (64 residues), 24.3 bits, see alignment E=3.2e-08 amino acids 221 to 279 (59 residues), 32.8 bits, see alignment 7.4e-11 PF14559: TPR_19" amino acids 190 to 252 (63 residues), 43.4 bits, see alignment E=3.2e-14 PF13181: TPR_8" amino acids 280 to 311 (32 residues), 12.1 bits, see alignment (E = 0.00018) PF00685: Sulfotransfer_1" amino acids 419 to 615 (197 residues), 36.5 bits, see alignment E=3.4e-12 PF13469: Sulfotransfer_3" amino acids 420 to 612 (193 residues), 170.3 bits, see alignment E=6.8e-53

Best Hits

KEGG orthology group: None (inferred from 58% identity to ccr:CC_3128)

Predicted SEED Role

"TPR domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (679 amino acids)

>LRK54_RS04460 tetratricopeptide repeat-containing sulfotransferase family protein (Rhodanobacter denitrificans FW104-10B01)
MTNATAIGTLEQALAHAERLLQSDPALAGEQAAEILKVATNHPAALRLLAAARIGQGDTQ
GALEILEQLARSQPNWALAQLDLGLALGHDGRGQQAIDALRRAVALKPDLPQAWRALGDH
LMAAGEQHAADAAYANHVRHSTSDPQLLAAAVALVENRIPEAEALLREHLKQAPTDVAAI
RMFAEVAARLGRNEDALHLLERCLELAPGFDAARQNYAQVLHRSNRPEQALAQIERLLAT
APTHPGYRNLKAVVLCRVGDYEPAIAIYAELLEQYPDNPKVWMSYGHALKTAGHAGRAID
AYRRSLALEPSFGEVWWSLANLKTFRFGADDLATMRRQLARAELAEDDRLHLEFAVGKAL
EDAGEYEPSFRHYAQGNAIRRAQLHYSADETSARVRHIRQRYTRGFFAARAGCGSPARDP
IFVVGLPRSGSTLIEQILASHSQVEGTMELPEVTSITRLLRERAGADGEMPYHDALAALD
AGALRELGERYLDNTRIQRKTAAPLFIDKMPNNFMHVGLIHLMLPNATIIDARRHPLACC
FSGFKQHFARGQGFSYSLEDLGRYYRDYVALMAHFDAVLPGRIHRVFYERMVEDTEGEIR
RLLDHCGLPFEESCLRFFQNERPVRTASSEQVRRPIYREGVDHWQNYAPWLVPLESTLGQ
VLQRYPEVPGFESDVAVSD