Protein Info for LRK54_RS04400 in Rhodanobacter denitrificans FW104-10B01

Annotation: DUF885 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 610 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF05960: DUF885" amino acids 58 to 585 (528 residues), 581.1 bits, see alignment E=2.3e-178

Best Hits

KEGG orthology group: None (inferred from 66% identity to abb:ABBFA_000081)

Predicted SEED Role

"FIG00351490: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (610 amino acids)

>LRK54_RS04400 DUF885 family protein (Rhodanobacter denitrificans FW104-10B01)
MKILSLLICTSLLGPAAIASPAPAAPAAQVATADVAARVKALNALLAEQWQHTLRNAPEF
ATILGDLRYNDRWSDASLEHARAEYKVNQDFLRRFEAIDTRGFPDSDKLNQQLMVRQLKD
GLRAYDLKLNEMPLEQMSGAHLQLAGFVSSIPFNSTREYEDYLARLHAIPKLLDQVTAVA
RQGLRDGMMPPRYLLEKVVTQIDSIAKPAGVDSAFGQPLKHFPASVAPADRQRLREAIVA
AIDHEVRPAYRKLGQFVAKDYAPHGRSQPGVWQLPNGEAIYRYQVEQMTTTRESPQHIHE
LGLAEVKRIEAEMTAIAKAQGYKDLASFRAALRKDPNVHPTSREDILNRYRGFIAQMQPQ
LPKLFGLLPKTRVEVLPVEAYREKEAPGAEYHQGTPDGSRPGQVYVNTGDYANRTTLSIE
STAYHEAIPGHHMQISIAQTLPALPPFRQQAGYTAYIEGWALYAERLGKDIGFYKDPLSD
YGRLADELLRADRLVLDTGVHYKHWTRQQMVDFFRAHSSEDEPSIQAETDRYVTWPGQAL
AYKMGQLKILALRERAKQELGDRFDIRAFHDEILGGGALPLDVLEVRTDAWIAAVKAGKA
PARPAPVAAG