Protein Info for LRK54_RS03625 in Rhodanobacter denitrificans FW104-10B01

Annotation: 50S ribosomal protein L1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR01169: ribosomal protein uL1
  • amino acids 2 to 228 (227 residues), 323.5 bits, E=3.1e-101
• PF00687: Ribosomal_L1
  • amino acids 29 to 220 (192 residues), 209.7 bits, E=1.7e-66

Best Hits

Swiss-Prot: 69% identical to RL1_XANAC: 50S ribosomal protein L1 (rplA) from Xanthomonas axonopodis pv. citri (strain 306)

KEGG orthology group: K02863, large subunit ribosomal protein L1 (inferred from 70% identity to xal:XALc_0504)

MetaCyc: 62% identical to 50S ribosomal subunit protein L1 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L1p (L10Ae)" in subsystem Ribosome LSU bacterial

Protein Sequence (234 amino acids)

>LRK54_RS03625 50S ribosomal protein L1 (Rhodanobacter denitrificans FW104-10B01)
MKITKRMKAAQAAVQPGKFYGLEEALKIVKDNAKAKFAESVDVAVRLGIDAKKSDQGVRG
SSLLPHGTGKTVKVAVFCPPGEKAEAAKAAGADAVGMDDLAERMQGGDLDFGRVIATPDA
MRVVGKLGQLLGPRGLMPNPKDGSVTADVATAVKNAKAGQVKFRNDKAGIIHATIGKANF
EASQLADNLNALIADLLKAKPATAKGQFLQKVALSSTMGVGVAVDTSSLTIAAK