Protein Info for LRK54_RS01675 in Rhodanobacter denitrificans FW104-10B01

Annotation: acetyl-CoA carboxylase, carboxyltransferase subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR00515: acetyl-CoA carboxylase, carboxyl transferase, beta subunit
  • amino acids 1 to 285 (285 residues), 424.4 bits, E=1.1e-131
• PF17848: zf-ACC
  • amino acids 29 to 54 (26 residues), 41.3 bits, see alignment (E = 1.4e-14)
• PF01039: Carboxyl_trans
  • amino acids 106 to 242 (137 residues), 58.3 bits, E=5.9e-20

Best Hits

Swiss-Prot: 70% identical to ACCD_XANCP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (accD) from Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)

KEGG orthology group: K01963, acetyl-CoA carboxylase carboxyl transferase subunit beta [EC: 6.4.1.2] (inferred from 69% identity to xfa:XF1467)

MetaCyc: 68% identical to acetyl-CoA carboxyltransferase subunit beta (Escherichia coli K-12 substr. MG1655)
RXN0-5055 [EC: 2.1.3.15]

Predicted SEED Role

"Acetyl-coenzyme A carboxyl transferase beta chain (EC 6.4.1.2)" in subsystem Fatty Acid Biosynthesis FASII (EC 6.4.1.2)

MetaCyc Pathways

• superpathway of fatty acids biosynthesis (E. coli) (49/53 steps found)
• superpathway of fatty acid biosynthesis II (plant) (38/43 steps found)
• superpathway of fatty acid biosynthesis I (E. coli) (14/16 steps found)
• biotin-carboxyl carrier protein assembly (4/4 steps found)
• fatty acid biosynthesis initiation (type II) (3/3 steps found)
• superpathway of anaerobic energy metabolism (invertebrates) (13/17 steps found)
• superpathway of fatty acid biosynthesis initiation (4/5 steps found)
• propanoyl CoA degradation I (2/3 steps found)
• 2-oxobutanoate degradation I (2/4 steps found)
• fatty acid biosynthesis initiation (type I) (1/3 steps found)
• anaerobic energy metabolism (invertebrates, mitochondrial) (6/10 steps found)
• 3-hydroxypropanoate cycle (7/13 steps found)
• methylaspartate cycle (11/19 steps found)
• 3-hydroxypropanoate/4-hydroxybutanate cycle (10/18 steps found)
• candicidin biosynthesis (1/6 steps found)
• jadomycin biosynthesis (3/9 steps found)
• superpathway of L-methionine salvage and degradation (8/16 steps found)
• superpathway of candicidin biosynthesis (4/11 steps found)
• glyoxylate assimilation (5/13 steps found)
• superpathway of the 3-hydroxypropanoate cycle (7/18 steps found)
• superpathway of mycolate biosynthesis (21/239 steps found)

KEGG Metabolic Maps

• Fatty acid biosynthesis
• Propanoate metabolism
• Pyruvate metabolism
• Tetracycline biosynthesis

Isozymes

Compare fitness of predicted isozymes for: 6.4.1.2

Use Curated BLAST to search for 2.1.3.15 or 6.4.1.2

Protein Sequence (289 amino acids)

>LRK54_RS01675 acetyl-CoA carboxylase, carboxyltransferase subunit beta (Rhodanobacter denitrificans FW104-10B01)
MNWLQKIMNPRTRPHATNGGKGSVPEGVWEKCGGCGTVLYKPELERNLMVCPKCGHHHYI
SARARLDALLDESSAQELWAGLEPTDPLKFRDSKKYRDRIVATQKKIGEKDAMVVMSGRL
KGRPLVAAAFEFAYMGGSMGSVVGEKFARAAERALADRSALVCFSATGGARMQEALFSLM
QMAKTSATLARLRDAGVPYISVLTNPTTGGVSASLAMLGDINIGEPKALIGFAGPRVIEQ
TVRETLPEGFQRSEFLLEHGAIDLIVDRREMRDKLADLLGILMKAPRAA