Protein Info for IAI47_17935 in Pantoea sp. MT58

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 24 to 30 (7 residues), see Phobius details amino acids 66 to 86 (21 residues), see Phobius details amino acids 107 to 130 (24 residues), see Phobius details amino acids 149 to 167 (19 residues), see Phobius details amino acids 188 to 213 (26 residues), see Phobius details amino acids 216 to 216 (1 residues), see Phobius details amino acids 250 to 271 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 75 to 273 (199 residues), 42.6 bits, see alignment E=2.9e-15

Best Hits

KEGG orthology group: None (inferred from 98% identity to pva:Pvag_3505)

Predicted SEED Role

"ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (281 amino acids)

>IAI47_17935 ABC transporter permease subunit (Pantoea sp. MT58)
MKGKGVALLLLLPFTLFWVAFQLAPLLWIAINSFWSDMNSQWGWDNYHDILTSPFYQQAF
RFSLDISLWSSVWGLLIALVTGYSLHQLGGGRLQRFLISFTNMTSNFAGVPLAFAFVILL
GLNGCLTLLLRHYGVIESFRLFSRNGMVLVYTWFQIPLGVLLLYPAFDGLKKEWQESAAL
LGASRWRYWWHIGLPILFPALLGTFVILLANALGAYATIYALTTGNFNVVPVRIAALVSG
DISLDPNTGSALAMLLVAIMALITLVQQYLVRRSYLNAKQP