Protein Info for IAI47_16310 in Pantoea sp. MT58

Annotation: L-fucose:H+ symporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 110 to 131 (22 residues), see Phobius details amino acids 152 to 171 (20 residues), see Phobius details amino acids 204 to 221 (18 residues), see Phobius details amino acids 259 to 279 (21 residues), see Phobius details amino acids 289 to 309 (21 residues), see Phobius details amino acids 317 to 334 (18 residues), see Phobius details amino acids 340 to 361 (22 residues), see Phobius details amino acids 373 to 393 (21 residues), see Phobius details amino acids 401 to 421 (21 residues), see Phobius details TIGR00885: L-fucose:H+ symporter permease" amino acids 20 to 420 (401 residues), 320.8 bits, see alignment E=8.2e-100 PF07690: MFS_1" amino acids 40 to 277 (238 residues), 43.4 bits, see alignment E=1.1e-15

Best Hits

KEGG orthology group: K02429, MFS transporter, FHS family, L-fucose permease (inferred from 99% identity to pva:Pvag_0044)

Predicted SEED Role

"Homolog of fucose/glucose/galactose permeases" in subsystem Hexose Phosphate Uptake System

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (441 amino acids)

>IAI47_16310 L-fucose:H+ symporter permease (Pantoea sp. MT58)
MQQKIVQQSDGYLNKTPLFQFILLSCLFPLWGCAASLNDILITQFKSVFALSDFASALVQ
SAFYGGYFLIAIPASLVIRKTSYKMAIMIGLALYIAGCIAFYPASHMATYTMFLAAIFAI
AIGLSFLETAANTYSSMIGHRDHATLRLNVSQTFYPIGALMGIVLGKYLVFQDGDSLESQ
MAAMTAEQAHAFRLTMLEHTLEPYKYLVMVLVVVMLLFMFTRYPRCKPESNETSRPSLGE
TFRYLAANRHFKRGILTQFLYVGMQVAVWSFTIRLALTLGAANERHASNFMIYSFVCFFI
GKFVANFLMTRFRAEKVLIAYSVLGVLTLAYVMLVPNFTAVYAAVFVSVLFGPCWATIYA
GTLATVDNKYTEVAGAFIVMAIVGAAFVPALQGLVSDTLGSMQLAFGVSLLCFAWVGFYF
YGELRHKKQPVAAGRLVEELP