Protein Info for IAI47_16270 in Pantoea sp. MT58

Annotation: urea carboxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1205 PF00289: Biotin_carb_N" amino acids 1 to 110 (110 residues), 146.2 bits, see alignment E=2e-46 TIGR02712: urea carboxylase" amino acids 2 to 1205 (1204 residues), 1960 bits, see alignment E=0 PF02786: CPSase_L_D2" amino acids 116 to 320 (205 residues), 210.2 bits, see alignment E=1.1e-65 PF07478: Dala_Dala_lig_C" amino acids 142 to 291 (150 residues), 31.9 bits, see alignment E=3.7e-11 PF02785: Biotin_carb_C" amino acids 336 to 440 (105 residues), 123.7 bits, see alignment E=1.4e-39 TIGR00724: biotin-dependent carboxylase uncharacterized domain" amino acids 449 to 773 (325 residues), 330.5 bits, see alignment E=9.1e-103 PF02626: CT_A_B" amino acids 472 to 752 (281 residues), 326.3 bits, see alignment E=6.7e-101 PF02682: CT_C_D" amino acids 810 to 1031 (222 residues), 126.5 bits, see alignment E=4.6e-40 PF00364: Biotin_lipoyl" amino acids 1145 to 1202 (58 residues), 61.2 bits, see alignment 2.7e-20

Best Hits

Predicted SEED Role

"Urea carboxylase (EC 6.3.4.6)" in subsystem Urea decomposition (EC 6.3.4.6)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.3.4.6

Use Curated BLAST to search for 6.3.4.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1205 amino acids)

>IAI47_16270 urea carboxylase (Pantoea sp. MT58)
MFTTVLIANRGEIACRAIRTLKRLGVKSVAVYSDADRNAQHVKQADIAIALGGEKASDSY
LRIDKILAAAQQSGAQAIWPGYGFLSESQPFADACDAAGIAFVGPTAQQIGEFGLKHRAR
ELAASAGVPMTPGTPLLASLEEAMQAADKIGYPVMLKSTAGGGGIGLTRCADADALASAW
ESVRRLGEQFFSDAGVFLERCIDRARHVEVQIFGDGKGNVVALGERDCSLQRRNQKVVEE
TPAPGLSQATRDALLASAVRLGERVNYRSAGTVEYIYDVSQQAFYFLEVNTRLQVEHPVT
ECVTGLDLVECMLQVAAGDAVDWSRLQQAPQGAAIEVRLYAEDPLKNFQPSPGLLTGVTF
PDGVRVDSGIETGSEVSSFYDPMIAKLIVHADTREAALEKLHHALDATQLHGIATNLDYL
RQITRSDAFRSGNVWTRYLDSVVPAASVVEVLQPGTFSSVQDYPGRLGYWDIGVPPSGPM
DDFAFRLANRIVGNHEAAAGLEFTLQGPTLRFHCDAILALTGADCDARLDGEPVSAWQPL
AVKAGQTLALGRARQGCRSYLAVRNGFDVPEYLGSRSTFSLGQFGGHAGRTLRVADMLAI
SRPERAACTTPAPVSDPQPLDATLIPHYGSEWRIGVLYGPHGAPDFFTQAAIDEFFASDW
QVHYNSNRLGVRLVGPKPTWTRANGGEAGLHPSNVHDCEYAIGAVNFTGDFPVILTHDGP
SLGGFVCPVTIAKAELWKVGQVKPGDTIRFHPITADDALAREKAQMHLIDTLRPDHPPTF
AVPSLAETAHGSATILSAIEATGSTPKVVYRQAGDKYVLIEYGDNVLDLALRLRVHLLMN
ALTAQAEPGVEELSPGVRSLQVRYDSRIISQSALMSLLLALEATLGDVSTLKVPSRVVWM
PMAFEDSATLGAVSRYQETVRASAPWLPNNVDFIQRINGLSSRDEVRDTLFNGSYLVLGL
GDVYLGAPCAVPIDPRHRLLSSKYSPARTFTAEGTVGIGGMYMCIYGMDSPGGYQLVGRT
LPIWNTFLKNPQFTADAPWLLRFFDQVRFYPVSETELNQLREDFREGRASLRIEETQFDF
AAHQQFLADHAAEIADFRQRQATAFEQEVQLWAQEEQNAPAADEVPDSVGEVDEGGLAVQ
ADLNGNIWKVLVQPGDEVSAGQTLIIVEAMKMELAIVAPQAGRVTRIACQAGRPVSPGDT
LLWLE