Protein Info for IAI47_14865 in Pantoea sp. MT58

Annotation: AAA family ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1224 PF13476: AAA_23" amino acids 6 to 204 (199 residues), 74.9 bits, see alignment E=2.1e-24 PF13558: SbcC_Walker_B" amino acids 1111 to 1180 (70 residues), 49.4 bits, see alignment 6.6e-17

Best Hits

KEGG orthology group: K03546, exonuclease SbcC (inferred from 91% identity to pva:Pvag_0334)

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1224 amino acids)

>IAI47_14865 AAA family ATPase (Pantoea sp. MT58)
MKILTLRFKNLNALRGEWFIDFRAEPFASNGLFAITGATGAGKTTLLDAICLALYHQTPR
LGAISQSQNALMTRDCAECLAEVEFEIKGEAWRAFWSQNRARGTADGKLQAPRVELARCA
DNTIVADKVGDKLKMIETLSGLDFERFTRSMMLSQGQFAAFLNAKASERAELLEELTGTE
IYGLISAAIYERHKEAKTQLDMLRSQASAMALLDSDARDALQQQLTDLTDAEQRLSAHYQ
QAQQQQQWQQQAQQLQQESEQADAALQQAQSASQAAETDRQRLARSEPAEKLRIKLQQRD
ALRTEQQQIVSHCQQLTASAQQAQNQQQQHQQNYAAAQTARQQALQEQQQQENLLTEQVL
PLDQRIMTLQQHFAEQQQENARQQQQADQTQTRLAEQKRQVTSVQQAMTEQHQLREQLAD
LAHWGASLPVWQENFALLAQREAMLAELQQQCEQQQKQIDAQQAKQQQQAQQALPRQQAE
QQAHQALLQAEQALTSLHEQHPPAALRQALSQLQTSRPARQQLLLLSTQWQPLHQQLNQR
QQRLTALEKAQQQSEAELQTLRETWKREKQQLDDVEKICALEQQIIDLSDYRARLTPDQP
CPLCGSCTHPAIETYSTLEVSANQQRRAALLQQTETLREAGTAKSEQLKQSAVQQQTLRD
EIAEMQRQLDQLEQQWQALSGELALTFTLADREALAAWQQQQSEHESQLEQQRQAQEAAE
QARQAAKDHHLQQLQAWQQHLQAEQLAQQSLISLQQALDALHQRKQQEQQAMAQLQSRLA
QQFSAHNLALPDAANRDTWLAEQQRRWQRWQESEQLLANLQPQLLKGETQLTALQQQAEQ
EQQQLAIRQQQQQQSQRQLGEMRQQRQALFGDREVTLARQQMQARIQQSDEQLTQQLAAL
QQAQAEVSRLQGELSGLENQRQTLSGKLAEAESALQQSLESAGFADEASLRAALLDEQTA
LQLRQQLQQLDQQCQQQQARRADLRQRLSVHQQAKPDAMPESAEALAQQLEQLRLALRDN
ASLQGQVQQQLHSDASLRARQQSLMTQIEQDGVVLAQWSRLNDLIGSATGDKFRRFAQGL
TLDHLVSLANRQLDRLHGRYLLQRRAQDLLELDVVDTWQADAARDTRTLSGGESFLVSLA
LALALSDLVSHKTRIESLFLDEGFGTLDAQTLDTALDALDALNASGKTIGVISHVEAMKE
RIPVQIKVRKMNGLGYSQLELPQG