Protein Info for IAI47_06865 in Pantoea sp. MT58

Annotation: multidrug efflux RND transporter permease subunit MdtC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1023 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 336 to 353 (18 residues), see Phobius details amino acids 360 to 384 (25 residues), see Phobius details amino acids 390 to 411 (22 residues), see Phobius details amino acids 431 to 457 (27 residues), see Phobius details amino acids 465 to 490 (26 residues), see Phobius details amino acids 527 to 545 (19 residues), see Phobius details amino acids 853 to 871 (19 residues), see Phobius details amino acids 878 to 895 (18 residues), see Phobius details amino acids 901 to 918 (18 residues), see Phobius details amino acids 950 to 970 (21 residues), see Phobius details amino acids 982 to 1007 (26 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1008 (1005 residues), 1176.2 bits, see alignment E=0 PF03176: MMPL" amino acids 237 to 490 (254 residues), 35.1 bits, see alignment E=1.1e-12

Best Hits

Swiss-Prot: 81% identical to MDTC_ERWT9: Multidrug resistance protein MdtC (mdtC) from Erwinia tasmaniensis (strain DSM 17950 / CIP 109463 / Et1/99)

KEGG orthology group: K07789, RND superfamily, multidrug transport protein MdtC (inferred from 80% identity to cro:ROD_22081)

MetaCyc: 80% identical to multidrug efflux pump RND permease subunit MdtC (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-352; TRANS-RXN-353; TRANS-RXN-92

Predicted SEED Role

"Multidrug transporter MdtC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1023 amino acids)

>IAI47_06865 multidrug efflux RND transporter permease subunit MdtC (Pantoea sp. MT58)
MKFFALFIHRPVATTLLTLAIALAGMLGFRLLPVAPLPQVDFPVIVISASLPGASPEIMA
SSVATPLERSLGRIAGVSEMTSTSSLGSTRIILVFDFDRDINGAARDVQAAINAAQSLLP
TGMPSRPTYRKVNPSDAPIMIMTLTSDTYNPGQLYDYASTQLAQKLSQIEGVGDVTVGGS
SLPAVRVALNPQALFNQGVSLDAVRTAISNANQRRPQGALDDGQQRWQLRTNDALQTARE
YQPLVVHYNNGAAVRLSDVATVEDSVQDVRNAGMSRGKPAVLLLIRKTPEANVIDTVDRI
RAEMPLLHEVIPAAIDLEIAQDRSPTIRASLHEVEQSLIIAVALVILVVFVFLRSGRATL
IPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENIARHVEAGMKP
LAAALKGVREVGFTVLSMSLSLIAVFLPLLMIGGLIGRFFSEFSITLSVSILISLFISVT
LTPVMCAYLLKPHAPRSQPRQRGVGRLLMAIQQGYGRSLNVVLNHARWVLLLFFATIALT
GWLFVHIPKTFMPEQDTGRLSGFISADQSISFQAMRSKLQDFMEIVGADPAVDSVVGFTG
GMRTNSGSMFISLKPLSERKESALEIIARLRTKLAKEPGANLYLNAVQDLRAGGRESNAA
YQYSLLSDDLGALRTWEPKIREAFSALPQLADVNSDQQDKGSEMALTYDRESMARLGIDV
SQANALLNNAFGQRQISTIYQPLNQYKVVMEVDPRYTQDISALSQMFVINSDGKAIPLSW
FAHWQPANAPLSVNHEGLSAASTISFNLPEGVSLSQASEAIERTMTAIGVPSSVRGSFAG
TAQVFQQSQSSQLWLMLAAIAAVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDT
PFSLIALIGILLLIGIVKKNAIMMVDFALEAERNGQLSAREAIFQACLLRFRPIMMTTLA
ALFGALPLVLSSGDGAELRQPLGITIAGGLVMSQLLTLYTTPVVYLMMDKLRRKKRPLTA
AAQ