Protein Info for HSERO_RS23910 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 596 transmembrane" amino acids 44 to 63 (20 residues), see Phobius details amino acids 87 to 108 (22 residues), see Phobius details amino acids 165 to 186 (22 residues), see Phobius details amino acids 206 to 226 (21 residues), see Phobius details amino acids 290 to 309 (20 residues), see Phobius details amino acids 314 to 315 (2 residues), see Phobius details amino acids 330 to 331 (2 residues), see Phobius details PF06472: ABC_membrane_2" amino acids 37 to 315 (279 residues), 194.6 bits, see alignment E=3.3e-61 PF05992: SbmA_BacA" amino acids 40 to 365 (326 residues), 139.9 bits, see alignment E=2.1e-44 PF00005: ABC_tran" amino acids 403 to 535 (133 residues), 54.8 bits, see alignment E=2.5e-18

Best Hits

KEGG orthology group: K02471, putative ATP-binding cassette transporter (inferred from 100% identity to hse:Hsero_4779)

Predicted SEED Role

"ABC transporter, fused ATPase and inner membrane subunits (EC 3.6.3.27)" (EC 3.6.3.27)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.27

Use Curated BLAST to search for 3.6.3.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZ36 at UniProt or InterPro

Protein Sequence (596 amino acids)

>HSERO_RS23910 ABC transporter ATP-binding protein (Herbaspirillum seropedicae SmR1)
MTDPHAKSATPPSPHALDTPNRASRAEIWALIRPFWVSEEKWKAWALLLSIIALNLGMVY
INVRLNSWNRDMYDVLQSRDYAQFKALLWQFSWLAFIFVAIAIYSVYLKQALQIRWRYWM
SQRYLDRWLAHRAYYRIEQGQQGRLSDNPDQRIAEDLQALTSSTLSLVLGFISSSVTLFS
FIHILWAVSGPLTFSALGQSWVIPGYMVWFVIAYAVVGSGLVWWIGRPLVGLSFHQERFE
ANFRFGLIRVREHAEAVALYRGEPQEHAQLTARLDDIRRNWWEIMRLTKMLNVAVNFYGQ
FAVIFPMLVSAPRYFSGAISLGVLMQISNAFGQVQDALSWFINAFTTLASWKASINRLAG
FNADVERAAGMPRHIDVAPHAGSAVTLQGLQLSFPDGAPMMHALDARVESGEHVLISGPS
GCGKSTLMRAMADIWPYGQGRIQLPQDAPAMFLPQRSYLPIGTLRAALSYPAAEGSFDDA
LITRYLGLCRLAHLADRLDVAANWSHALSPGEQQRLAFVRVFLNRPRLVFLDEASSAMDG
QTEEVLYAALPRELPGVTVISIAHRETLARFHDVRWHFVAPGEGEGGGHRVEMAPV