Protein Info for HSERO_RS23835 in Herbaspirillum seropedicae SmR1

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 34 to 53 (20 residues), see Phobius details amino acids 63 to 83 (21 residues), see Phobius details amino acids 95 to 118 (24 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 195 to 216 (22 residues), see Phobius details amino acids 227 to 249 (23 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 289 to 309 (21 residues), see Phobius details PF03547: Mem_trans" amino acids 4 to 304 (301 residues), 115.7 bits, see alignment E=9e-38

Best Hits

KEGG orthology group: K07088, (no description) (inferred from 100% identity to hse:Hsero_4764)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZ21 at UniProt or InterPro

Protein Sequence (311 amino acids)

>HSERO_RS23835 transporter (Herbaspirillum seropedicae SmR1)
MLAIFNIVFPVFSLIFLGWACRKRNILSGGAATELNRFVIWLALPALLFDSMSRLSAADF
ANLRFIAVFALSTALVFLLTAWLRWRERAAAADIIIDSLGSAYANVGFIGIPLCYLAFGH
DGLPPSVIAMVMTACLLFAVAIVLLETCLHAQAGLAHTVAKVGRSLLRNPIMIAPVAGII
VAVFGLPVPSGVQQLFKILGGAAGPCALVSLGLFLAQPVQDRQGASVSLLVAFKLLLQPA
ITAVLAYWLLPLPRLWADAAVLLSAMPIGTGPFMLAELYQREVTAMSRAILVSTTLSLPT
IALILAWIAHR