Protein Info for HSERO_RS23825 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 625 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF05430: Methyltransf_30" amino acids 94 to 203 (110 residues), 30.7 bits, see alignment E=5.3e-11 TIGR03197: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain" amino acids 236 to 610 (375 residues), 355 bits, see alignment E=2.9e-110 PF01266: DAO" amino acids 237 to 589 (353 residues), 172.2 bits, see alignment E=4.6e-54 PF13450: NAD_binding_8" amino acids 239 to 277 (39 residues), 27.5 bits, see alignment 6.3e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4762)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IZ19 at UniProt or InterPro

Protein Sequence (625 amino acids)

>HSERO_RS23825 hypothetical protein (Herbaspirillum seropedicae SmR1)
MPARPLQLASSELLAAWRADAAQHQRVLALPPDCLREQQAATVLDLHFALGQNFFATWRA
FDELRGQGGAQRLHYVAILPHPPAPHELIDDLSYAQALRAAWPLPLPGTHRLLLDEGRIT
LTLVWGALEEELARLEAPVDLFYLHAHAQAFDPDAPAWQAPACKRLARLAWTGAQAVVLG
GAGRDDLQAALRQVGFAGQSREGALHLRYAPGWARPPSHVATRETPLLRYPQANRHAIVI
GAGLAGTAAAERLSARGWRIDLIDAGPEPATRASGNHAGLFMPALARDDSPLARLTRAAF
LFAAQRWQALGGVGMEEGAAILGECCGILQFGRDAKQAQSFEQGAREWDYPARYARWMSA
QETADALGMPTMGGGYFFPEAGWLNPPSVCRRMLAVARQSNLVHSHFGCTVHRLQREGGQ
WQALDQAGESIAQAPVVILAAGAQASALPIAAALPLNAVRGQVTHLPAEGFPRLPFALCG
DGYLTRAHGGLVCMGATYDRFQDPALRVDSHAENLGRLQHMLPQIATHTHLPPASAPSLQ
GRVGQRCIAPDRLPLVGALPGQAGLYGLLGYASRGLIWAPLMAELLAAMLEREPLPLPRD
LVAALDPARFGTTAASDLELPAELE