Protein Info for HSERO_RS23180 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 494 transmembrane" amino acids 7 to 28 (22 residues), see Phobius details amino acids 287 to 306 (20 residues), see Phobius details PF02743: dCache_1" amino acids 32 to 272 (241 residues), 61.6 bits, see alignment E=8.2e-21 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 322 to 490 (169 residues), 179 bits, see alignment E=3.2e-57 PF00990: GGDEF" amino acids 327 to 487 (161 residues), 166.8 bits, see alignment E=3.4e-53

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4636)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IXY0 at UniProt or InterPro

Protein Sequence (494 amino acids)

>HSERO_RS23180 membrane protein (Herbaspirillum seropedicae SmR1)
IKQLKNYLVVILAIAVLMVMAISASTLYQSYQQTRQSAVSNASNVTLVSQRAISRNLEML
SLSLDTLAYRFQHPLSARRLNDAQRYAYLFGSTTNVSHIAVMAVLDADGRVQVSSRLGRG
NGAPHYADRAYFIAHRDSPTVGLYVSRPMQASLGNELQVVVLSKRLSNEDGSFAGVVVMA
LDLAYFRELFEGLALGDEGIISLYSDEGIAYMRVPYRETIIGRDISQTGNFQRLRAMLSE
EEGSFFAHATNDGVRRLYTFRRIPGSPLIVFVGYAEEAIFKTWRKTFYAVLVSLAIFGLL
TAWLLLHVRQELRRRVTAERQLEALARTDGLTDLLNRRALDEALQATWERCQRNLGASFS
VLFIDVDYFKAYNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEEFVVLLEQTDL
QGAQMMAQRLCDAVRERHIAHTSSPLAVVTISVGVATLERDHHRRVEDVLNAADAALYRA
KQAGRDRVHLSSQA