Protein Info for HSERO_RS22985 in Herbaspirillum seropedicae SmR1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 82 to 101 (20 residues), see Phobius details amino acids 110 to 129 (20 residues), see Phobius details amino acids 145 to 164 (20 residues), see Phobius details amino acids 170 to 188 (19 residues), see Phobius details amino acids 222 to 243 (22 residues), see Phobius details amino acids 263 to 281 (19 residues), see Phobius details amino acids 292 to 310 (19 residues), see Phobius details amino acids 316 to 339 (24 residues), see Phobius details amino acids 351 to 371 (21 residues), see Phobius details amino acids 381 to 401 (21 residues), see Phobius details PF07690: MFS_1" amino acids 24 to 318 (295 residues), 143.1 bits, see alignment E=1.6e-45 PF00083: Sugar_tr" amino acids 42 to 203 (162 residues), 72.4 bits, see alignment E=5.5e-24 amino acids 222 to 410 (189 residues), 41.4 bits, see alignment E=1.4e-14 PF12832: MFS_1_like" amino acids 45 to 357 (313 residues), 31.1 bits, see alignment E=2e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4597)

Predicted SEED Role

"Sialic acid transporter (permease) NanT" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IX26 at UniProt or InterPro

Protein Sequence (413 amino acids)

>HSERO_RS22985 MFS transporter (Herbaspirillum seropedicae SmR1)
MFSWYRQVTAKERKTFWACFSGWALDALDVQMFSLAIPALIAAFSLSKADAGLISGATLV
ASAIGGWFAGALSDRYGRVKTLQITIIWFSFFTFLSAFAQSFPQLLVLKALQGFGFGGEW
AAGAVLMAETIRAEHRGKAMGTVQSAWAVGWGGAVLLFSVLFSLLPQEMAWRVMFVIGLL
PALLVVYVRRSVQETDAFLAGQKAAASKPAASTLLGIFRPDVLRLTIIGSLLGVGAHGGY
YALMTWLPTYLKTEKHLSVLSTGGYLAVIIVAFWCGCIASSQLLDRIGRRRTVAFFALAC
VATVLCYIFLPLSDTQMLVCGFPLGFFAAGIPASMGALFNELYPSGIRGTGVGFCYNFGR
VASAGFPVLVGHMSDSMPLGQAIGIDAAIAYSLVVVAVLMLPETKGRKMETSA