Protein Info for HSERO_RS22940 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details TIGR01728: ABC transporter, substrate-binding protein, aliphatic sulfonates family" amino acids 37 to 316 (280 residues), 208.2 bits, see alignment E=7.8e-66 PF04069: OpuAC" amino acids 37 to 249 (213 residues), 37.6 bits, see alignment E=6.1e-13 PF13379: NMT1_2" amino acids 60 to 251 (192 residues), 30 bits, see alignment E=1.5e-10 PF09084: NMT1" amino acids 73 to 256 (184 residues), 44.4 bits, see alignment E=6e-15 PF12974: Phosphonate-bd" amino acids 76 to 197 (122 residues), 38 bits, see alignment E=4.1e-13 PF00497: SBP_bac_3" amino acids 114 to 251 (138 residues), 32.3 bits, see alignment E=2.3e-11

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 100% identity to hse:Hsero_4588)

Predicted SEED Role

"Alkanesulfonates-binding protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization or Putative sulfate assimilation cluster

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IX17 at UniProt or InterPro

Protein Sequence (323 amino acids)

>HSERO_RS22940 ABC transporter substrate-binding protein (Herbaspirillum seropedicae SmR1)
MDAHQPRHKRRLLLQGLAAGALASGTPLVRAAADKVLRIGYQKFNTLNILKGSGKLEQAL
QPQGWSVKWFEFAAGPQLTEALNANAIDLGHAADTPSVFANASGVNAVYLGAEQPYPKGI
GIFVAQESPIRSVADLKGKKVATGRGWNVQFLLLKALEEVGLSYRDIEPVYVTNAADVRA
AFQSGNVDAATLWDPFLAGQELATRPRILRDGTGLSNNRTFHLAVPSFVDRHKDIVRTVF
AELKKTNQWTQSHPQETAELLAPQLGVDPKVLRLATERRNYTTVAVDAGIVAEQQQIADA
FLKLGLIKNPVRVQDKVYPEVLV