Protein Info for HSERO_RS22470 in Herbaspirillum seropedicae SmR1

Annotation: D-xylose ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 377 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 44 to 64 (21 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 93 to 116 (24 residues), see Phobius details amino acids 123 to 147 (25 residues), see Phobius details amino acids 164 to 183 (20 residues), see Phobius details amino acids 201 to 219 (19 residues), see Phobius details amino acids 225 to 247 (23 residues), see Phobius details amino acids 272 to 291 (20 residues), see Phobius details amino acids 326 to 341 (16 residues), see Phobius details amino acids 352 to 371 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 40 to 367 (328 residues), 123.8 bits, see alignment E=3.8e-40

Best Hits

Swiss-Prot: 54% identical to XYLH_ECO57: Xylose transport system permease protein XylH (xylH) from Escherichia coli O157:H7

KEGG orthology group: K10544, D-xylose transport system permease protein (inferred from 100% identity to hse:Hsero_4496)

MetaCyc: 54% identical to xylose ABC transporter membrane subunit (Escherichia coli K-12 substr. MG1655)
ABC-33-RXN [EC: 7.5.2.10, 7.5.2.13]

Predicted SEED Role

"Xylose ABC transporter, permease protein XylH" in subsystem Xylose utilization

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.5.2.10 or 7.5.2.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IWS5 at UniProt or InterPro

Protein Sequence (377 amino acids)

>HSERO_RS22470 D-xylose ABC transporter permease (Herbaspirillum seropedicae SmR1)
MADLKQVFRRYKIIALLIAIAIIWGFFSFMTDGGFVTPRNLSNLLRQMSVTGILACGMVL
VIIAGEIDLSVGSLLGLLGGLAALLDVSHHLPLALNLVLALGFGLALGLLNGYLTAYLGI
PSFIVGLGGMLAFRGILLGITGGLTIAPVSDNMVYLGQGYLPPQMGVALGIALFVLAVAL
TWMSRVNRSRHGLPLAALWRDALKVVVIGAVLLAFVRTLNSYDGIPVPVLLLLALLGLFS
YVSTQTVFGRRIYSVGSNMEATRLSGVNVQAVKLWVFGIMGVMCALAGLVNTARLAAGSP
SAGNMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTYWQMIVKG
SILVLAVWVDVSTRSGR