Protein Info for HSERO_RS22370 in Herbaspirillum seropedicae SmR1

Annotation: lipid kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 358 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR03427: ABC transporter periplasmic binding protein, urea carboxylase region" amino acids 31 to 358 (328 residues), 538.7 bits, see alignment E=2.5e-166 PF09084: NMT1" amino acids 60 to 240 (181 residues), 34.1 bits, see alignment E=1.4e-12

Best Hits

KEGG orthology group: K02051, sulfonate/nitrate/taurine transport system substrate-binding protein (inferred from 100% identity to hse:Hsero_4476)

Predicted SEED Role

"Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein" in subsystem Urea decomposition

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IWQ5 at UniProt or InterPro

Protein Sequence (358 amino acids)

>HSERO_RS22370 lipid kinase (Herbaspirillum seropedicae SmR1)
VYNISRILGGAAIALAAFAGALSSAHAAPRTDFKVCTSIYAGWMPWGEAQAQGILAKWGK
KYGITINAVQLNDYVESINQYTAGKFDGCTMTNMDALTIPAAGGVDSTALIVGDYSNGND
GIVLKGKNKKLADIKGQSVQLVEFSVSHYLLARALETAGLRERDVKVVNTSDADITAAFA
TPAVTSTVTWNPMLSSIAASPDVSLVYTSKQLPGEIMDLMVVNTKTLQENPAFGKALTGA
WYEMMAIMSAKDERATRALTAMGKASGTDLAGFQAQLAATAMFYQPKAALEFATKKELPG
IMGRIAKFSFDHGILGPNVKSADGIGIAFDGNVVIGDKKNVKLRFDPAYMKMAADGKL