Protein Info for HSERO_RS22270 in Herbaspirillum seropedicae SmR1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 transmembrane" amino acids 32 to 54 (23 residues), see Phobius details amino acids 66 to 85 (20 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 155 to 177 (23 residues), see Phobius details amino acids 189 to 211 (23 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 291 to 311 (21 residues), see Phobius details amino acids 321 to 342 (22 residues), see Phobius details amino acids 348 to 368 (21 residues), see Phobius details amino acids 380 to 403 (24 residues), see Phobius details amino acids 410 to 432 (23 residues), see Phobius details PF07690: MFS_1" amino acids 35 to 288 (254 residues), 113.5 bits, see alignment E=1e-36 amino acids 261 to 441 (181 residues), 48.4 bits, see alignment E=6.9e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4456)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IVW4 at UniProt or InterPro

Protein Sequence (445 amino acids)

>HSERO_RS22270 MFS transporter (Herbaspirillum seropedicae SmR1)
MSQASISPAASAVATAAVSEDATMKKVMRRLIPFILLCYVVSYLDRINVGFAALTMNKDL
GLTPSQFGLGAGLFFIGYFFFEIPSNLALHRFGARMWISRIMISWGLISMATAFVVGPKS
FALARFLLGMAEAGFTPGIYLYFTQWFPGAWRGKATAFFLIGIPVANIIGSPLSGALMEL
HGMWGFKGWQVLLLLEALPAVLLGVMCLFLLPDRPAKAKWLSADEKQWLENELSTEQNVL
AARHGNKLKDAFTNWRVFALAGANFCGIIGSLSIGLWLPQIIREFGLPSHQVGLVAAIPY
LVGAVAMTLWARLANRSERRLFFVAGAIVLAALSLGISAFLHTPLLKMLAITVAVASILS
FQATFWAIPSGFLTGRAAAGGLALIVSIGNLGGFVGPSVIGFIREATQGFTYPLIFVAGA
LLLGAVITLALGDPSRVPPTSKETA