Protein Info for HSERO_RS22230 in Herbaspirillum seropedicae SmR1

Annotation: DeoR faimly transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 PF08220: HTH_DeoR" amino acids 6 to 61 (56 residues), 49.6 bits, see alignment E=2.6e-17 PF00455: DeoRC" amino acids 80 to 236 (157 residues), 134.9 bits, see alignment E=2.5e-43

Best Hits

KEGG orthology group: K03477, DeoR family transcriptional regulator, ulaG and ulaABCDEF operon transcriptional repressor (inferred from 100% identity to hse:Hsero_4448)

Predicted SEED Role

"Transcriptional regulator of rhamnose utilization, DeoR family" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IVV6 at UniProt or InterPro

Protein Sequence (267 amino acids)

>HSERO_RS22230 DeoR faimly transcriptional regulator (Herbaspirillum seropedicae SmR1)
MINHNRRKRLLSLLGEHTALTVEQFCHLLNASAATVRRDIAWLAERDMLTRTRGGAERLA
QKRSAFALSGETFQASLARQPAQKRAIARHAAEMCDNGETIIINGGTTTFLMAEYLAQKR
LKILTNSFLMAERLLTTSENQIIVPGGQIYREQNVILSPFENDITQHHYASKMFMGIYGV
SMLGLMEADPLLIQAEKRLLGQAEQLVVLADSSKFSRKAGLILCGLNRVNCLVTDTGISD
AAAQMMEQAGVKVVTVAPEHERLALVG