Protein Info for HSERO_RS22225 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF00532: Peripla_BP_1" amino acids 21 to 212 (192 residues), 23.2 bits, see alignment E=4.5e-09 TIGR02637: rhamnose ABC transporter, rhamnose-binding protein" amino acids 22 to 323 (302 residues), 455.1 bits, see alignment E=5.5e-141 PF13407: Peripla_BP_4" amino acids 22 to 280 (259 residues), 206.8 bits, see alignment E=4.6e-65

Best Hits

KEGG orthology group: K10559, rhamnose transport system substrate-binding protein (inferred from 100% identity to hse:Hsero_4447)

Predicted SEED Role

"Predicted L-rhamnose ABC transporter, substrate-binding component" in subsystem L-rhamnose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IVV5 at UniProt or InterPro

Protein Sequence (325 amino acids)

>HSERO_RS22225 ABC transporter substrate-binding protein (Herbaspirillum seropedicae SmR1)
LAAGAIGLIAAAPAHAAEKVRIAMVVKSLGNGFFDAAHEGAKEAARELGDVEVIYTGPTT
PTAEGQIEIVNSLISQKVDAIVISANDANALVPITKRAMQRGVKVLSFDSGIAKGGRLMQ
LNPSNAELIGLKQIQMAAEAIGGAGDVAILSATAQATNQNIWIGEMKKALARPEFSRMKL
VATVYGDDQSDKSYREAIGLLRSHPGLKAIIAPTTVGINAAGKAVVDEKLVGKVYVTGLG
LPSEMAGHVKSGAVKSFAIWNPIDLGYAATYAAYQFVKGKAQGKEGESIAVGRMGSIKLD
AAGEAALAPPFTYDASNVDKFAKIF