Protein Info for HSERO_RS22160 in Herbaspirillum seropedicae SmR1

Annotation: cation transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1073 signal peptide" amino acids 1 to 12 (12 residues), see Phobius details amino acids 30 to 31 (2 residues), see Phobius details transmembrane" amino acids 13 to 29 (17 residues), see Phobius details amino acids 347 to 364 (18 residues), see Phobius details amino acids 368 to 387 (20 residues), see Phobius details amino acids 394 to 414 (21 residues), see Phobius details amino acids 452 to 471 (20 residues), see Phobius details amino acids 481 to 507 (27 residues), see Phobius details amino acids 539 to 558 (20 residues), see Phobius details amino acids 882 to 901 (20 residues), see Phobius details amino acids 908 to 928 (21 residues), see Phobius details amino acids 934 to 958 (25 residues), see Phobius details amino acids 982 to 1001 (20 residues), see Phobius details amino acids 1011 to 1034 (24 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 1 to 1045 (1045 residues), 1755.9 bits, see alignment E=0 PF00873: ACR_tran" amino acids 5 to 1037 (1033 residues), 1176.9 bits, see alignment E=0

Best Hits

Swiss-Prot: 78% identical to CZCA_ALCSC: Cation efflux system protein CzcA (czcA) from Alcaligenes sp. (strain CT14)

KEGG orthology group: K07239, heavy-metal exporter, HME family (inferred from 78% identity to ajs:Ajs_1849)

MetaCyc: 72% identical to cation efflux system protein (Pseudomonas putida KT2440)
RXN1G01-61; TRANS-RXN0-200; TRANS-RXN0-244

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IVU2 at UniProt or InterPro

Protein Sequence (1073 amino acids)

>HSERO_RS22160 cation transporter (Herbaspirillum seropedicae SmR1)
MFERIIRFAIEHRWLVLLAVLGMGAYGVYSYQKLPIDAVPDITNVQVQINTSAPGYSPLE
AEQRISYPIETLMSGLPNLEQVRSLSRYGLSQVTVIFKDGTDIYFARQLVNERIQLARSQ
LPPGIDPGMGPISTGLGEIYLWTVESRDDARKPDGTPYTATDLREIQDWVIKPQLRLVPG
VTEINTIGGFAKEYLVAPSAEKLASYGMTMDTIIKALEKNNSNVGAGYIERRGEQYLIRA
PGQVASIDDIGNIVLANVKGVPIRIRDVAEVEIGRELRTGAATENGREVVLGTVFMLIGE
NSRKVSQAVARKMEEINRSLPKGVEAVTVYDRTVLVDKAIATVKKNLVEGALLVVAVLFV
FLGNIRAAIITAMVIPLAMLFTFTGMVSNKVSANLLSLGALDFGIIIDGAVVIVENCVRR
LAHAQAHHGRTLTRSERFHEVFAAAKEARRPLIFGQLIIMIVYLPMFALTGVEGKMFTPM
AFTVVAALIGAMILSVTFIPAAIALFIGEKVAEKENILMLWAKRLYEPMLKTIMENKPVV
LTFAGALILVCGVVASRLGSEFVPSLNEGDMAIQALRIPGTSLSQSLEMQKQIEKTLKQK
FPEVERVFARTGTAEVASDPMPPNISDGYIMLKPQEQWPEPKKSREELLEAIQDEVAKIP
GNSYEFSQPIQLRFNELISGVRSDVAVKVFGDDMKVLNDTASKISAVLEKIPGATEVKIE
QTTGLPMLTVEIDREKTARYGLNVSDIQDTVATAIGGKEAGTMFQGDRRFGIVVRLPDQA
RTDLEAIRRLPIALPPQEGATRVSYVPLGEVASLTIAPGPNQISREDGKRRIVVSANVRG
RDLGGFVAEAERQLQSAVKVPAGYWTTWGGQFENLQSATQRLQIVIPVALLMVFVLLFAM
FSNVKDGLLVFTGIPFALTGGILALAMRGIPMSISAAVGFIALSGVAVLNGLVMISFIRS
LREEGRTLDAAIHEGAMTRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGIL
SSTALTLLVLPLLYKLAHDKDEEDNPAGPPSRPPFWKFWVKQSSTLKGNHHGY