Protein Info for HSERO_RS22135 in Herbaspirillum seropedicae SmR1

Annotation: DNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 857 PF00270: DEAD" amino acids 140 to 293 (154 residues), 53.1 bits, see alignment E=4.9e-18 PF00271: Helicase_C" amino acids 437 to 514 (78 residues), 29.2 bits, see alignment E=1.5e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4429)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IVT7 at UniProt or InterPro

Protein Sequence (857 amino acids)

>HSERO_RS22135 DNA helicase (Herbaspirillum seropedicae SmR1)
MGNFNLQLAQRVASSQKFQIAYETLQKESLASLSGRTPSIDIGERNKLLRSALILAQSGS
KQYSTLSQDIVYALATLPLETSQRAVCEHILAMLGNFPASDFLKGNNLAHGRLPWNLKLS
EEVRRDENYVSVLGKEILLTDFQADVWDELKTQQFLSIAAPTSAGKSFLIQLYLKSLLGN
SDRLLDIAYVVPTRSLIHEVHASLIKAFTGFENPPVISSIPRADERLAATQSRIFVFTQE
RLRTAMDEADLALDCLIVDEAQQIADGSRGMLLLSCLEDVNERAPQAQILFITPGSRSGA
SIGSLMGLGELPSVETTLRPVRQNLIYVNFKSAKKKQHLQLTLHRENQKPLALENVDLEG
EPVSNAGARFLTAVMTLGDEGQNLVYASGKAAAEKMAEAIAAALGGKDNFVKQTEALLEL
SEFVKKHVHPQYALVDSIKSGVAYHYGSMPTTLTKAIEEYFANGALKYLVCTSTLLQGVN
LPARNIFIRNPKKGMGKPMGPDDFWNLAGRAGRLSKDTHGNVFLIEYKKWDRQPVEEVRQ
KEVTPSLSKAFTTSHTEVMDFIRDENHVSGAKDTNFAESVFARLFIDAKEGVMEQTIERA
TRGIAMESAVSISDAIREHLDKVMLPPELLKRNSSVSPLRQQAMFDVLLAVVKRGGTAQL
VPHHPLQSGQVKERLESIMDLIHRHLEGKETNQQYYFGWFALSWMRGSSLRDMIEHQIQY
ERRKAEVNGDEEPEPGKTIIKVLDDVENKLRFHYVRYIGCYIDLLKHAVGVVSPDRELDV
PPIPLFLELGACSGTMIGCMELGLSRIAARELTDLLGKSDLDAVAIKRRLINLKGASLKL
SPIIVSEIKRIGLETSA