Protein Info for HSERO_RS21845 in Herbaspirillum seropedicae SmR1

Annotation: transcription regulator protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 transmembrane" amino acids 356 to 372 (17 residues), see Phobius details PF13487: HD_5" amino acids 237 to 401 (165 residues), 105.6 bits, see alignment E=3.7e-34 PF00196: GerE" amino acids 424 to 476 (53 residues), 56.7 bits, see alignment 2.2e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4370)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IVN0 at UniProt or InterPro

Protein Sequence (485 amino acids)

>HSERO_RS21845 transcription regulator protein (Herbaspirillum seropedicae SmR1)
MPDAIHPAAPVSSPTVPAQVAVRALALAGDLSMGQPPDQSVRAARLAVRLAQLQGADEST
ARHAALVSLLRWSGCTANAAGFATLLGDDVGGREAMLRQGLPEGHPLNFANIAPLAHIHC
EVAGEVAALLGLPGPVEIGLRHVWEHYDGSGAPRQLTHEAIPPVVYLTSLAGDLEILSRT
HPVAAACQMILQLGGVKYPNAMAQLAVAHAPALLAALEQGGDIDADLPAHPVALSIVAEL
IELKLPWLTGYSRRVAELAVRAAALAGLDPEQGQRLERAALLHGIGRASVSNTIWERPGR
PSAADWERIRLAPYWTARAGALIPALRDEAELASRLYERLDGSGYFRNLDRDSLAMPARL
LAAAAALAALCAPRPWRGAMSEPDACQQLQADAQAGLFDPQAVQWVVAAAAGQGGAMPSL
PRRLLSEREAEVLRRISLGESNKEAARAMQISPSTVRTHVESIFRKLQCSTRAAATLKGL
SLGLI