Protein Info for HSERO_RS21700 in Herbaspirillum seropedicae SmR1
Annotation: SpoVR family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 66% identical to YCGB_ECOLI: Uncharacterized protein YcgB (ycgB) from Escherichia coli (strain K12)
KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4342)Predicted SEED Role
"FIG004684: SpoVR-like protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See D8IVK2 at UniProt or InterPro
Protein Sequence (509 amino acids)
>HSERO_RS21700 SpoVR family protein (Herbaspirillum seropedicae SmR1) MNSRFKHDPLPCPSDWSFELIERYNEEIARVAKGYELDIYPIQLEIISAEQMMDAYASHG MPVNYRHWSYGKHFMLTERDYKRGQMGLAYEIVINSDPCIAYLMEENTMTMQALVIAHAA YGHNSFFKGNYLFQLWTDASAIIDYLVYARNYIAECEERHGFERVEELLDSCHALMNYGV DRYKRPQRLSLAQEKARQREREAYMQSQVNELWRTLPAKKEMTAAAVEGRFPSEPQENLL YFAEKNAPLLEPWEREVIRIVRKVGQYFYPQRQTQVMNEGWATFWHYTLLNTLYDQGRLT DGFMMEFLHSHSNVVFQPPITKPYYNGINPYALGFSMMSDIRRICENPTDEDREWFPDIA GRNWLDTLQYVMRNYKDESFIAQYLSPKLMRDMRMFAVLDDESRSEIEVSAIHNERGFQY VRQALSRQYDINHREPNIQVWSVNTRGNRSLTLRHFRSDGRSLGDSTNEVLRHMARLWQF DVYLESVDDNGYIVQRYECVAENRYALRS