Protein Info for HSERO_RS21695 in Herbaspirillum seropedicae SmR1
Annotation: hypothetical protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 56% identical to Y721_PSEU5: UPF0229 protein PST_0721 (PST_0721) from Pseudomonas stutzeri (strain A1501)
KEGG orthology group: K09786, hypothetical protein (inferred from 100% identity to hse:Hsero_4341)Predicted SEED Role
"FIG002076: hypothetical protein"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See D8IVK1 at UniProt or InterPro
Protein Sequence (422 amino acids)
>HSERO_RS21695 hypothetical protein (Herbaspirillum seropedicae SmR1) VLHQIIDRRLAGKNKSIANRERFLRRFKGHIQRSVADAVRDRSITDLEKSKSISIPRKDV SEPFFHHGKGGKREAVHPGNQDYLQGDRIPRQNGGSGGGGGSSASNDGEGQDDFTFELTR EEFMHYFFEDLELPRLVETNLLQVPNWKNQRAGYSVDGSPNNIDVVRSLRSSLGRRIALG GPLQRQLDAAEEALTEMKRKPDEHRADIKLLEEEIRQLRARILRIPFIDPFDLRYVNRVR QPQPSSRAVMFCVMDVSGSMDEQRKDLSKRFFILLYLFLTRNYEHIEVVFIRHHTRADEV DENTFFHSQESGGTVVSSALELMHDIITKRYSPSEWNIYGAQASDGDNWNDDSPKCRELL ESAILPLTRYFAYIQVAEPEQNLWTEYMQLIESHPHFAMKKVQSAAEIYPVFRELFEKQV HA