Protein Info for HSERO_RS21525 in Herbaspirillum seropedicae SmR1

Annotation: alpha/beta hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 PF02129: Peptidase_S15" amino acids 30 to 126 (97 residues), 27.1 bits, see alignment E=5.1e-10 PF12146: Hydrolase_4" amino acids 53 to 154 (102 residues), 38.6 bits, see alignment E=1.1e-13

Best Hits

KEGG orthology group: K07018, (no description) (inferred from 100% identity to hse:Hsero_4307)

Predicted SEED Role

"Alpha/beta hydrolase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IUP4 at UniProt or InterPro

Protein Sequence (220 amino acids)

>HSERO_RS21525 alpha/beta hydrolase (Herbaspirillum seropedicae SmR1)
MNAHTQNFMITGAVGALECALDLPDPETFSTPVGLALVAHPHPLFGGTMDNKVAQTLART
FLALGYVAVRMNFRGVGKSEGVHDHGAGETDDMALLLQHMRSQYPDLPLALAGFSFGTFV
QAQLQQRLLQQDPASAAERLVLVGTAAGKWPMPPAPADTILIHGEQDDTIPLSAVLDWAR
PQELPVVVIPGSDHFFHRKLQHIKNVVVQSWHRRPAQLPA