Protein Info for HSERO_RS21415 in Herbaspirillum seropedicae SmR1

Annotation: lytic transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 666 signal peptide" amino acids 1 to 42 (42 residues), see Phobius details PF01464: SLT" amino acids 498 to 603 (106 residues), 74.8 bits, see alignment E=4.3e-25

Best Hits

KEGG orthology group: K08309, soluble lytic murein transglycosylase [EC: 3.2.1.-] (inferred from 100% identity to hse:Hsero_4285)

Predicted SEED Role

"Soluble lytic murein transglycosylase precursor (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IUM2 at UniProt or InterPro

Protein Sequence (666 amino acids)

>HSERO_RS21415 lytic transglycosylase (Herbaspirillum seropedicae SmR1)
MSMRPKNHPFKQRLRALVASMALPLALAGVAAFALAPAAQAQKRLAADAAPDDIFLALRQ
AAATDNAALAQDLASRLSGYELASYVDYYRLKPRVRDYSASEQEIRDFLARWDGQAIVDR
LRNDWLLALGKTGNWAVFDEQYPKFVLNDDTQVKCFALNSRALKGENVAEEARALLTNPK
DYGQGCSDLIATLAQNGQFSQADVWFQIRQAAENGNATVARRAAVLVDSGDVSVTQVMDR
PALMLAKGPGKGVANHQLYIIALGRIAKSNPAQAATYLNDAGRNLTSQEAAQAWAQIALA
ASYKLAPEASDYWRRAKDTPLTQDAMQWKVRMALRDGDWKTVRRTIEAMPAPLRSDTAWV
YWLGRALKEDGQHDAARRLFESIAPNFSFYGQLALEELGQKITIPPGPTPPGAGEVALYS
QNAGFKRSLKFYQLNLRFEAIREWNWELRNMTDRQLLAAAEYARQNDVLDRMVNTSDRTK
SEFDFTQRFPAPHLPEMNAATKPLGMENAWVYGLIRQESRFIKSARSHVGASGLMQLMPA
TAKFVARKIGMSEFTADQVNDINTNLLLGTSYLDMVLNNLEGSETLATAGYNAGPGRPRT
WRATLPRTVEGAIFAEIIPFNETRGYVKNVMSNATYYAAMFENRPQSLKQRMGTVAPNSN
VATDLP