Protein Info for HSERO_RS21225 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 831 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF03537: Glyco_hydro_114" amino acids 32 to 275 (244 residues), 90.2 bits, see alignment E=6.2e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4248)

Predicted SEED Role

"Extracellular Matrix protein PelA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IUI5 at UniProt or InterPro

Protein Sequence (831 amino acids)

>HSERO_RS21225 hypothetical protein (Herbaspirillum seropedicae SmR1)
LAAAAAALLTGSAPAQGTAATAPAPTSAAFYYGVNPPLADLQAFDVAVVEPEFVRNPAAR
TRAAADGMHQLFAYVSLGEVQPSRPYYKQLPPGLLRGDNAAWGSRVIDQNAPGWRDFFLD
KIIAPLWAQGWRGFFLDTLDSYQLFAKTDAERAVQTQAMIATLREFKRRYPEAKLILNRG
FELLPEIAPLTYAVAAESLYRGYDAGRRSYGPVKDNDRAWLMGQMQTARERYHLPVIAID
YVDPQQSGARALARETAQKISADGFIPWVADGGLVSMGVSSVELVPRNVLVLLDVAEGDD
LHTTEAQRFLGIQLNHLGLRYEFRDVGREGLPTEPLAGRYAGVVTWFRSGTNHQRLGPWI
GQRIKEGVPVAIFSAFGFQMTKLSAGMLGLTSFSAPVPEQLDVTHYDPELMGFETRPRVD
RTQLENVRLSDPAAPVLLRMKDGRDNTYDAAAITPWGGFALAPFAITTAPVIDPPRWVLQ
PMLFLKRALRLPDMAVPDVTTEGGRRIQTSHLDGDGFPSKAEYPGSPFAVEVLQREIWDR
YRFPVTVSVVEGELSPQGVYPQLSAQTTALARKMFTLPYIEPASHSFSHPFNWADAMHDT
RTADITQMDGDASRTLEIPNYKFNLQREIKGSMDYINNTLLPPGKKAEVFLWTGNCVPPP
EAIAQTYLDGYLNMNGGDTMITKSRNTWTDIAAQGVRKQGWYQVFAPNQDENVYTGNWTG
PFYGFERAIESYELTGEPVRFKAVDIYYHFYAGTKPASVAALHKIHRWAQAQPFTRLYVS
QYIRKVIDFENTSIARTADGALVYRTGAHLRTLRLPPGTPDYDLSAPGIAG