Protein Info for HSERO_RS21220 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1349 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF13429: TPR_15" amino acids 544 to 821 (278 residues), 209.2 bits, see alignment E=1.3e-65 PF24604: B-barrel_PelB_C" amino acids 1044 to 1348 (305 residues), 191.3 bits, see alignment E=4.7e-60

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4247)

Predicted SEED Role

"Extracellular Matrix protein PelB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IUI4 at UniProt or InterPro

Protein Sequence (1349 amino acids)

>HSERO_RS21220 hypothetical protein (Herbaspirillum seropedicae SmR1)
LFSPWTIAGFALAVGTVFALVYPKVSLQQRLEVANASGRGDQLTIEYLKVFLKAKPGNTA
LRAELVKQMIDLGQFAEARQQLAFLQMGTDPAARLAAAWLEYRIRQQEAFALPATSPERT
RLLAELRIQLQQLMTYPLSAQQWLGLSQDALALGDVEAARVAFERLLAERSTRDLPYGEA
VRLGQQSLGMGDYRSSASFYLLAMQHAGSLEARRDNFITALRNLQAGGLYQEALEVADAN
LGPLANDKATLLFLTRLAQAANRPEAAERYVRQLLQLSMGRAAATLARAGQGSAALATVH
FQQMSEFTRSLRLTRALLQQPQQPHQLQQRMQMAMRQARVIRVAAADPSQPPAAEVNASR
ELARLPFDDEIYTLAYNVFLGNRNLTDARLLAQSAVRQRPDDAAWRKRLAEVSEWSGVPE
QATPHWLAYARLTNDEAAWDNVMRIAAGTFEQDILTEALQHKMQVEPGDPKWVNLLVAQY
ENVGQPERAAALLEARLRQNRTAAANANANAATERNGEMDALAKLYLRMGRDDDANAVLV
RQRQEFGPSAANALMAANLLYLRGRGEQALELLRQAAPVAPPGNADFWRTYAELARYLGL
DEEARRGYDQLLATNQAAEGDMSNLMVVIQEHEPRAAAELAEFGFRRTSVANFAVQALTY
RMRLNDLDGGQRFLDSITPQQNAALEKYVPYLSVRSAFRQMKHDYAGARADMRLALSLSP
RSAEVRAEMIWILIATRDTELLNRALTLWAADAENAPQLWGPFAAANISLNRQNVALHWF
RKSGFPQNDYLWLLSYAEALDASGQPDLAWRIRRRAWIELRDPARLRNIPPAQLREWRDR
LAALAPLFMPADASNKVMRALLDSDVTRLVRSDAAPPPADGPALLKDMQAAARSDARQHA
QDQDVSARLMDGPAALFAPTGDTGQRPRDDARLSASARELALAYAMNQGDSDLARTWLAT
RFATQLDKPLWGELAMALGNDDRQGLNRLLDNLADWLPMYDRIEAARVAGRVPLAQTLAF
DQLQRLPGDDELHARLTGLVTDDPAKFSAGYTATREFPLATKLFTLSSGVNLTPGTRLDF
GYIERRQSVDDSTLLGDVPAVDRLYSFTLRRRIEEGFVSAALQHRQAMTSFNGLRLEFSR
QLTPKLTLSGNGGINLSATDSAFMRVGAKRDGGELNLNVQLSRTEYLRLGGGLQHYASQS
GTSLGRGRTLNAEVGTHFRVEYPNLTLRAFVNDAKFTDYGNSDSLIARLVPVGTDPASFR
YMPLDSRSWGAALGAGTVVENAYTRAWRPYAEFGMTRTSDIGWGRNLRAGIAGSVVGQDV
LSIGAQSTAATPNNPQRGFELNVLYRWFY