Protein Info for HSERO_RS21210 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 transmembrane" amino acids 52 to 74 (23 residues), see Phobius details amino acids 86 to 118 (33 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details PF01590: GAF" amino acids 232 to 344 (113 residues), 29.8 bits, see alignment E=8e-11 PF16963: PelD_GGDEF" amino acids 365 to 489 (125 residues), 147.2 bits, see alignment E=2.3e-47

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4245)

Predicted SEED Role

"Extracellular Matrix protein PelD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IUI2 at UniProt or InterPro

Protein Sequence (491 amino acids)

>HSERO_RS21210 membrane protein (Herbaspirillum seropedicae SmR1)
VSDTPRQGRGAGPQRPWAAGMSTALTAGQKRQKFWSRFFTRFDTDSGSPRKAVLRIIETV
ALVLAALLFAHWVAPEDPMGIRAQFPWLWLVPAILAMRYGSTLGVVAVATMMAGWYLLVH
GHQASEADAVAAAAQAFPQSYFLGGLVLTLLCGQFAEVWNARSRRLRAINAYLDERLTML
TKNHFLLRLSHERLEQDLLSKPLTLRESLDRMRALTLTQILLDPSRMPAPDAFLQILAQS
CQVASAAVYVCDAAGHITPEPAASVGKVSELAADDALVRYCLAQRKLGHIQTESLNQNLR
NQSRYLVCAPLLNFDGRLFGLLVVEQLPFVALNEDTLQLMSVLIDYYADGIEVGGTARSI
LQQLPTCPPELAVDVVRLHRLKRSTDIDSSLVALVFGDDEISRDMFDQIRRLKRAADVVW
TYKAGGRNVLMTLLPLAGAAAVDGYLMRVEAASQAQFGAKSLANYAAIHTAAIGGDEPSR
LLPNLVERCAA