Protein Info for HSERO_RS21180 in Herbaspirillum seropedicae SmR1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 51 to 75 (25 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 109 to 133 (25 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 172 to 192 (21 residues), see Phobius details amino acids 215 to 237 (23 residues), see Phobius details amino acids 253 to 270 (18 residues), see Phobius details amino acids 282 to 300 (19 residues), see Phobius details amino acids 306 to 326 (21 residues), see Phobius details amino acids 338 to 358 (21 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details PF07690: MFS_1" amino acids 37 to 354 (318 residues), 79.4 bits, see alignment E=1.3e-26

Best Hits

Swiss-Prot: 42% identical to YYCB_BACSU: Uncharacterized transporter YycB (yycB) from Bacillus subtilis (strain 168)

KEGG orthology group: K03449, MFS transporter, CP family, cyanate transporter (inferred from 100% identity to hse:Hsero_4239)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IUH6 at UniProt or InterPro

Protein Sequence (401 amino acids)

>HSERO_RS21180 MFS transporter (Herbaspirillum seropedicae SmR1)
MTLPTPATHPHGVSPVPRSLWLIAGILLIAANLRAPVTAVGPVMGVLQQTFALSAGAAGL
MLTLPLLCFALVSPLAARTARSLGLERTLLLALLLIGAGILLRSSGTVAGLLAGTCIIGC
GIAGGNVLLPSLLKRDFADDLTRMTAIYALTMNSVSALGSVCAVPLATRLGWAWALAAFI
ALPLVAMLAWLPQLQRDTRPANVPARAASIWRQPLAWQVTFFLGTNSLVYYVVTAWLPSI
LAANGYSAVQAGNLHGLMQLASALPGLLLVPLGPRIRDHRPVAVSMSAATVLSLVGLIAW
PQASLVWVPLFGFGTGAVLILGLAFVGTRVSTPPQAAALSAMAQSVGYLLAATGPIVMGR
LHDANGGWTPVLALCAGGAVLMGWLGWLAGRPGRVIGASAK