Protein Info for HSERO_RS21080 in Herbaspirillum seropedicae SmR1

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 transmembrane" amino acids 75 to 93 (19 residues), see Phobius details PF13439: Glyco_transf_4" amino acids 12 to 181 (170 residues), 41.3 bits, see alignment E=3.5e-14 PF13579: Glyco_trans_4_4" amino acids 13 to 169 (157 residues), 55.9 bits, see alignment E=1.3e-18 PF13692: Glyco_trans_1_4" amino acids 200 to 357 (158 residues), 61.3 bits, see alignment E=2.5e-20 PF00534: Glycos_transf_1" amino acids 201 to 371 (171 residues), 86.9 bits, see alignment E=2.5e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4216)

Predicted SEED Role

"Glycosyl transferase, group 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IUF3 at UniProt or InterPro

Protein Sequence (400 amino acids)

>HSERO_RS21080 glycosyl transferase (Herbaspirillum seropedicae SmR1)
LRVLYLHPAGAYGGASKSLIELFSLMRQSAIDGTVLTPGGSAASAFADAGMSVVPVRGLS
QFDNTRYGHYRRLRWIILLRELLFLPGSLWTLWRMRGEQFDVIHVNEITLLPLGIIAKKI
FRRPMVIHVRSLQCAPPGNWRTRLVNGWLARHADAVVPIDHTVAATLGRDLSLEIVHNGL
RVDAGKHLDGAAQGARGTVRVGFMGVLIALKGIYELLEAMRILKNRGVAIECVIAGENAR
NLKGLRAWVLRKLGFARNVRADLEQMIHDYGLEKHVQLLGFVKDVRSLYPTLDILCFPSH
LDAAGRPVFEAAFYSIPSVVAVKDPLPDAVLHEHTGLAIPSPEPELIADALQRLAEDHVL
RQTLGRQARDWAISNFSIESSASTMVAIYRRLRSKDERKQ