Protein Info for HSERO_RS20940 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 signal peptide" amino acids 12 to 13 (2 residues), see Phobius details amino acids 32 to 34 (3 residues), see Phobius details transmembrane" amino acids 14 to 31 (18 residues), see Phobius details amino acids 43 to 62 (20 residues), see Phobius details amino acids 69 to 94 (26 residues), see Phobius details amino acids 102 to 124 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (141 amino acids)

>HSERO_RS20940 hypothetical protein (Herbaspirillum seropedicae SmR1)
MRFRTNYQLKYPSLLLACLVVSISLQLLVALFGQSVYWWEEKLTSLAISLLTDIAVFLHY
RFPTRPGAIVLQVLVVLSLLLLIGSFVLVTLLFSSSSSNSLLSIQFIAIIMALLVFHGLL
LVSFHVKRVTEQSMVEENSKP