Protein Info for HSERO_RS20715 in Herbaspirillum seropedicae SmR1

Annotation: cell division protein FtsY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 PF02881: SRP54_N" amino acids 40 to 101 (62 residues), 46 bits, see alignment E=1.2e-15 TIGR00064: signal recognition particle-docking protein FtsY" amino acids 51 to 320 (270 residues), 335.7 bits, see alignment E=1e-104 PF06414: Zeta_toxin" amino acids 118 to 169 (52 residues), 25.2 bits, see alignment 2.4e-09 PF13604: AAA_30" amino acids 120 to 217 (98 residues), 27.6 bits, see alignment E=5.6e-10 PF00448: SRP54" amino acids 122 to 320 (199 residues), 239.2 bits, see alignment E=7.7e-75

Best Hits

Swiss-Prot: 57% identical to FTSY_NEIGO: Signal recognition particle receptor FtsY (ftsY) from Neisseria gonorrhoeae

KEGG orthology group: K03110, fused signal recognition particle receptor (inferred from 100% identity to hse:Hsero_4146)

Predicted SEED Role

"Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)" in subsystem Bacterial Cell Division or Two cell division clusters relating to chromosome partitioning or Universal GTPases (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITI6 at UniProt or InterPro

Protein Sequence (321 amino acids)

>HSERO_RS20715 cell division protein FtsY (Herbaspirillum seropedicae SmR1)
VAEVTEQAEEAEIVPAPAPAPEAKRSWLSRLKAGLSKTSSNLTTLFVGARIDEDLYEELE
SALLVSDAGVEATQWLLDELKKKVKAERLTEAAQVRTALRTLLIELLQPLQRPLVLGRDK
PLVMMIAGVNGAGKTTTIGKLALHLQAHGQSVLLAAGDTFRAAAREQLAVWGERNNVQVI
AQESGDPAAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIGKAMHSAPH
EVLLVIDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGV
GEQIEDLQAFNATEFVDALLS