Protein Info for HSERO_RS20710 in Herbaspirillum seropedicae SmR1

Annotation: peptidase M16

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF00675: Peptidase_M16" amino acids 40 to 184 (145 residues), 83.3 bits, see alignment E=1.8e-27 PF05193: Peptidase_M16_C" amino acids 194 to 376 (183 residues), 121.3 bits, see alignment E=4.4e-39

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4145)

Predicted SEED Role

"FIG015547: peptidase, M16 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITI5 at UniProt or InterPro

Protein Sequence (459 amino acids)

>HSERO_RS20710 peptidase M16 (Herbaspirillum seropedicae SmR1)
MKLKIRALLASALLGLFASSPMLAQAEPARQFVLGNGMKVIVKEDRRAPTAVQMVWYKVG
GIDEVNGLTGVSHALEHMMFKGTRNHKVGEFSRLVAELGGQENAFTANDFTAYFQQIEKS
HLEKVMALEADRMANLQFDAAEFAKEIRVIMEERRWRTDDQPMGLLNEALNAAAWTAHPY
HHPVVGWMDDLQHMSVQDIAAWYRQWYAPNNATLVVAGDVDAQRVLALARKYFGKIPARR
LPAGKPQNEPQQLGMRRVTVKAPAENPYVVMAWKTPALRQVEQDQDVYALDVLSAVLDGY
DNARLSASLVRTGGKATAVGASYSGVARGPVLFTLEGSPAEGVTTAQLEGLLRGEVERIA
REGVSEQELQRVKTQLIASQVYKRDSVFGQAMEIGMMETAGLGQQNIDRIIERLKSVTAA
QVQAVAQQYFQDDTLTVATLVPLPLAGKKPAPPPAGLLH