Protein Info for HSERO_RS20680 in Herbaspirillum seropedicae SmR1

Annotation: multidrug DMT transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 37 to 56 (20 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 122 to 140 (19 residues), see Phobius details amino acids 151 to 168 (18 residues), see Phobius details amino acids 180 to 206 (27 residues), see Phobius details amino acids 213 to 232 (20 residues), see Phobius details amino acids 241 to 262 (22 residues), see Phobius details amino acids 269 to 285 (17 residues), see Phobius details PF00892: EamA" amino acids 8 to 136 (129 residues), 53 bits, see alignment E=2.4e-18 amino acids 151 to 285 (135 residues), 30.7 bits, see alignment E=1.8e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4139)

Predicted SEED Role

"PROBABLE TRANSMEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITH9 at UniProt or InterPro

Protein Sequence (295 amino acids)

>HSERO_RS20680 multidrug DMT transporter permease (Herbaspirillum seropedicae SmR1)
MQVLPKSAVAALLVNTTIWGLSWTATRALEGMGLHPVWTTAAIFGLCTLLLVALRYRDLP
QLWRHPALLWVGLATGLTNSTFNVAVAYGDVVRVILLFYLMPVWTVILARLVLHEAITPR
SLTRVALGLSGAFIVLYQPRLGLPLPQSLPDWMAVAAGLLFAITNVLLRRLQGLSDSARA
VAMLAGSGLLAGVLGVMLALAGAIAWPLHVPATAWPLVGVWALLFLVSNLCLQYGVARLP
ATITSVIMLAEILVASLSAWWFGAAELRPQDLIGGILIIAAPWLVRDSRPVAQSA