Protein Info for HSERO_RS20650 in Herbaspirillum seropedicae SmR1

Annotation: phenylacetic acid degradation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 158 TIGR00369: uncharacterized domain 1" amino acids 33 to 144 (112 residues), 87 bits, see alignment E=9.8e-29 TIGR02286: phenylacetic acid degradation protein PaaD" amino acids 34 to 146 (113 residues), 164.8 bits, see alignment E=7e-53 PF03061: 4HBT" amino acids 63 to 136 (74 residues), 44.3 bits, see alignment E=9.2e-16

Best Hits

KEGG orthology group: K02614, phenylacetic acid degradation protein (inferred from 100% identity to hse:Hsero_4133)

Predicted SEED Role

"Phenylacetic acid degradation protein PaaD, thioesterase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITH3 at UniProt or InterPro

Protein Sequence (158 amino acids)

>HSERO_RS20650 phenylacetic acid degradation protein (Herbaspirillum seropedicae SmR1)
MSETALPFPSTEMDPQALAEATVQAMYPRDNASQALGMKILEIAPGRARMSMLVRSDMLN
GHATCHGGFIFALADSTFAFACNSRNLNTVASGCSIEYVAPALRNDMLIAEAQERSLAGR
TGVYDITVSNQDGKTIALFRGKSYRIRGEVISGLQAAQ