Protein Info for HSERO_RS20600 in Herbaspirillum seropedicae SmR1

Annotation: transcription regulator protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 transmembrane" amino acids 152 to 170 (19 residues), see Phobius details amino acids 182 to 201 (20 residues), see Phobius details PF00440: TetR_N" amino acids 16 to 59 (44 residues), 52 bits, see alignment 4.8e-18 PF17932: TetR_C_24" amino acids 83 to 193 (111 residues), 68.3 bits, see alignment E=7e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4123)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ITG3 at UniProt or InterPro

Protein Sequence (206 amino acids)

>HSERO_RS20600 transcription regulator protein (Herbaspirillum seropedicae SmR1)
MPRKRAAGYDNQRETIVEQAAALFARNGFVGTSMNEVALACGLSKASLYHYFADKHQLLM
HICEDHIDRLCALVDEVAQQDLAPEPRLRLLVQRFVEEYRDAQNEHRVLTEDVRFLEPGD
QKRILNGERKVVKAVADAMSAVRPELDRSRMAKPLAMLLFGMINWMFMWLKPDGELTHER
MAVVVSDLLFGGIGAVGLDGAGKKKR