Protein Info for HSERO_RS20200 in Herbaspirillum seropedicae SmR1

Annotation: type VI secretion system protein ImpK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 transmembrane" amino acids 206 to 226 (21 residues), see Phobius details TIGR03349: type IV/VI secretion system protein, DotU family" amino acids 29 to 234 (206 residues), 190.8 bits, see alignment E=1.3e-60 PF09850: DotU" amino acids 30 to 228 (199 residues), 191.6 bits, see alignment E=6.4e-61

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_4041)

Predicted SEED Role

"Probable transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ISU6 at UniProt or InterPro

Protein Sequence (259 amino acids)

>HSERO_RS20200 type VI secretion system protein ImpK (Herbaspirillum seropedicae SmR1)
MNMTSPPSLLDPTPLQMPVTTGAPINARSLLDLIYDGFYALFMLKNGGTPVDDVSFESKM
QKFLGEVERNAKKINASPDDIYAAKYAFCASVDEIILRSKFGIRPAWERRPLQLTMFGDQ
LAGENFFHKLEELRLHGNAHIQALEVFHMCLLLGFQGKYALEGPEKLNYLTARLGDEIAH
LKGKSAGFAPHWERPDAVINKLRNDVPLWVVISLFALITLFAYLGVRWMLISDTENGLAG
YSDIVKLAPRTANLTITLP