Protein Info for HSERO_RS19980 in Herbaspirillum seropedicae SmR1

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 transmembrane" amino acids 26 to 44 (19 residues), see Phobius details amino acids 50 to 71 (22 residues), see Phobius details amino acids 78 to 97 (20 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 157 to 157 (1 residues), see Phobius details amino acids 179 to 198 (20 residues), see Phobius details amino acids 226 to 246 (21 residues), see Phobius details amino acids 265 to 290 (26 residues), see Phobius details amino acids 301 to 328 (28 residues), see Phobius details PF02653: BPD_transp_2" amino acids 50 to 314 (265 residues), 107.9 bits, see alignment E=2.6e-35

Best Hits

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 100% identity to hse:Hsero_3998)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ISQ3 at UniProt or InterPro

Protein Sequence (338 amino acids)

>HSERO_RS19980 ABC transporter permease (Herbaspirillum seropedicae SmR1)
MKSVNTPNTPNPSAMQPVLRLPNDRWTLLEILFWLLPVAAYFIFPDYLVLISQIMIVGLF
AVSLDLILGYAGIVSLGHAAFFGLGAYTAGLLAVHGWGEPITGLLLAAVVAAIAGFLVSF
LVVRGADLTRLMVTLGIGLMLFEAANKAAFITGGVDGLSGMVMGKIFGVFEFDLNGRVAY
GYSFAVLLLLFVILRRLVNSPFGLGLRGIREGGRRMPAIGADVNRRLVVIFTVAAAVAGV
AGALLAQTTQFVGLDVLGFPRSAELLIILVLGGTGRLYGGLVGALVYMLAQDYLSGLNPA
YWQFWIGLLLIVIVLFARGGLLGGLAVLRDKFFKGGRA