Protein Info for HSERO_RS19765 in Herbaspirillum seropedicae SmR1

Annotation: amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 transmembrane" amino acids 21 to 47 (27 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 87 to 114 (28 residues), see Phobius details amino acids 134 to 156 (23 residues), see Phobius details amino acids 165 to 188 (24 residues), see Phobius details amino acids 208 to 229 (22 residues), see Phobius details amino acids 241 to 264 (24 residues), see Phobius details amino acids 295 to 315 (21 residues), see Phobius details amino acids 350 to 369 (20 residues), see Phobius details amino acids 376 to 402 (27 residues), see Phobius details amino acids 415 to 435 (21 residues), see Phobius details amino acids 447 to 467 (21 residues), see Phobius details PF13520: AA_permease_2" amino acids 30 to 450 (421 residues), 88.8 bits, see alignment E=3.9e-29 PF00324: AA_permease" amino acids 46 to 431 (386 residues), 70.1 bits, see alignment E=1.6e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3956)

Predicted SEED Role

"Amino acid transporters"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8ISL1 at UniProt or InterPro

Protein Sequence (485 amino acids)

>HSERO_RS19765 amino acid permease (Herbaspirillum seropedicae SmR1)
MSQVDCTTQDKEENALRKNALGVGFIIFFVVSAASPLSVIAGGFPIGIMLGNGAGTPALL
VLILLLLLAFSVGYTTMARHVTNAGGFYAFSSAGLGGIAGGVAGVLAMFAYNILQIGLYG
MFGGVMSATFSDIFGIHLAWWVYAAVAMLSVAILGYRNIDLSARLLSVVVVAEYLAVLVL
DFCILRSGGDRGVNLDSFSPANVMSGTPSIGLLFAFAAFIGFEATTIYGEEAKNPKRAIP
IATYTSVLLIGGFYGISLWSLIIGAGSDKVVKLLEGMQDPTAFIYLMSDHYAGPGLTAVI
RILFVISIYAGLLAFHSSAARYFYAVGRDGLLHRLLGTTHRTYQSPHMGSALQSAIAAVV
VTLFAVFDAHPILHLFAWFSSLAALCLMLLMIMTSAAVICYFRRRPEACNSAWRVRILPA
VSLLALLYILSTAILHFDVLTGASRSMSYALCSMIPLAIVLGVMLATRLRRCAPLRFAAL
GSHKL