Protein Info for HSERO_RS19605 in Herbaspirillum seropedicae SmR1

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 44 to 66 (23 residues), see Phobius details amino acids 86 to 109 (24 residues), see Phobius details amino acids 117 to 139 (23 residues), see Phobius details amino acids 145 to 164 (20 residues), see Phobius details amino acids 207 to 232 (26 residues), see Phobius details amino acids 238 to 258 (21 residues), see Phobius details amino acids 270 to 289 (20 residues), see Phobius details amino acids 295 to 314 (20 residues), see Phobius details TIGR03718: integral membrane protein, TerC family" amino acids 10 to 316 (307 residues), 412.5 bits, see alignment E=6e-128 PF03741: TerC" amino acids 84 to 285 (202 residues), 187.7 bits, see alignment E=8.6e-60

Best Hits

Swiss-Prot: 54% identical to ALX_SALTY: Putative membrane-bound redox modulator Alx (alx) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3926)

Predicted SEED Role

"Integral membrane protein TerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IS55 at UniProt or InterPro

Protein Sequence (325 amino acids)

>HSERO_RS19605 membrane protein (Herbaspirillum seropedicae SmR1)
VNGVESFASWPMWAGFILFVLGMLAVDMFALGGRNAHRVSPREALGWSAVWVSLAFVFAG
LMWWYLDAHVGREFANQKGAEFLSGYLIEKALSVDNIFVFLMIFSYFAVPPEMQRRVLLY
GVVGAIVMRAVMILLGAWMIAQFSWILYVFGAFLVFTGVKMLIFADKEADLGDNPLLRWL
RGHLKISNDYDGEKFTTRVNGVRYFTPLMLVLLLIEISDVIFAVDSIPAIFAITKDPFIV
FTSNMFAIMGLRALYFLLADSAERFHLLKYGLALVLLFVGFKMLASYWFHVPVVWSLSIV
GAILVVSIIASLALSKDKKKENSAA