Protein Info for HSERO_RS18890 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 181 PF00583: Acetyltransf_1" amino acids 53 to 143 (91 residues), 40.8 bits, see alignment E=2.5e-14 PF13508: Acetyltransf_7" amino acids 69 to 144 (76 residues), 29 bits, see alignment E=1.1e-10

Best Hits

Swiss-Prot: 55% identical to YRKN_BACSU: Uncharacterized protein YrkN (yrkN) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 99% identity to hse:Hsero_3782)

Predicted SEED Role

"GCN5-related N-acetyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IRD4 at UniProt or InterPro

Protein Sequence (181 amino acids)

>HSERO_RS18890 hypothetical protein (Herbaspirillum seropedicae SmR1)
LDAPHHPDLVTLERLQESDLAEFARALQEAFTAGAQEAFGQPQDELIPSVEDVYASCQAA
NAVSYRLLRQGQPVGGAVLIIDAHSGHNSLDFFFISPQAHGRGLGTQAWQAIERAYPQTR
VWETHTPYFEKRNIHFYLNKCGFKIVEFYHHQHPGPHRDEQSGPEMLDEMFRFEKRMDHP
D