Protein Info for HSERO_RS18870 in Herbaspirillum seropedicae SmR1

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 593 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 65 to 83 (19 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 285 to 306 (22 residues), see Phobius details amino acids 313 to 333 (21 residues), see Phobius details amino acids 403 to 406 (4 residues), see Phobius details amino acids 410 to 430 (21 residues), see Phobius details amino acids 451 to 473 (23 residues), see Phobius details amino acids 513 to 537 (25 residues), see Phobius details amino acids 558 to 582 (25 residues), see Phobius details PF03814: KdpA" amino acids 11 to 588 (578 residues), 810.9 bits, see alignment E=2.2e-248 TIGR00680: K+-transporting ATPase, A subunit" amino acids 242 to 589 (348 residues), 538.6 bits, see alignment E=8.8e-166

Best Hits

Swiss-Prot: 70% identical to KDPA_DECAR: Potassium-transporting ATPase potassium-binding subunit (kdpA) from Dechloromonas aromatica (strain RCB)

KEGG orthology group: K01546, K+-transporting ATPase ATPase A chain [EC: 3.6.3.12] (inferred from 100% identity to hse:Hsero_3779)

Predicted SEED Role

"Potassium-transporting ATPase A chain (EC 3.6.3.12) (TC 3.A.3.7.1)" in subsystem Potassium homeostasis (EC 3.6.3.12, TC 3.A.3.7.1)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.12

Use Curated BLAST to search for 3.6.3.12

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IRD1 at UniProt or InterPro

Protein Sequence (593 amino acids)

>HSERO_RS18870 ATPase (Herbaspirillum seropedicae SmR1)
MDSNNYYQLGLYLAVLLLLSLPLGWYMARVMEGKSRVNRLFGGIERVFYRLCGISREHEM
DWKQYAIAVVLFNFIGAIAVYLLQRLQQWLPLNPAALASVSPDSSFNTALSFVTNTNWQG
YAGESTMSYLTQMAALALQNFLSAATGIAIAFALIRGFARHSSKGIGNFWVDMTRSTLYV
LLPLSVVLALVLVQQGSIQNFRAYQDVKTLEVTHYTVPKLDAAGQPLKDAKGEPVTEAQS
TDKQTLPMGPVASQEAIKMIGTNGGGFFNANSAHPYENPTPLSNFLQMLAILIIPAALCT
SFGVLVGDRRQGWAILAAMTLLFVVMTLVLMYAESQPNPMLASLHASGPGMMEGKETRFG
IPASALFASITTAASCGAVNAMHDSLSPLGGLVPMLQMQLGEVVFGGVGSGLYGMLIFAV
LAVFIAGLMIGRTPEYLGKKIGVFDMKMMSIAILMTPALVLIFTALSVMVEAGLAGIANP
GAHGFSEILYAFSSAANNNGSAFAGLSANTPYYNITTGICTWLGRFGIIVPVLAMAGSLA
GKKRLAATSGTLPTHGPLFVALLIGAVILVGALTYVPALALGPVVEHLQMMAM