Protein Info for HSERO_RS18715 in Herbaspirillum seropedicae SmR1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 436 transmembrane" amino acids 30 to 56 (27 residues), see Phobius details amino acids 68 to 90 (23 residues), see Phobius details amino acids 100 to 152 (53 residues), see Phobius details amino acids 164 to 187 (24 residues), see Phobius details amino acids 199 to 218 (20 residues), see Phobius details amino acids 253 to 277 (25 residues), see Phobius details amino acids 290 to 312 (23 residues), see Phobius details amino acids 319 to 336 (18 residues), see Phobius details amino acids 348 to 368 (21 residues), see Phobius details amino acids 382 to 404 (23 residues), see Phobius details amino acids 410 to 429 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 31 to 240 (210 residues), 63.8 bits, see alignment E=1.5e-21 PF07690: MFS_1" amino acids 72 to 396 (325 residues), 94.1 bits, see alignment E=8.4e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3747)

Predicted SEED Role

"L-Proline/Glycine betaine transporter ProP" in subsystem Proline, 4-hydroxyproline uptake and utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IR99 at UniProt or InterPro

Protein Sequence (436 amino acids)

>HSERO_RS18715 MFS transporter (Herbaspirillum seropedicae SmR1)
MTTSAEFTGALNESQHRPLSSSDYKTLGLSALGGTLEFYDFVIYVFFAAVVGKLFFPADM
PEWLRMLQTFGIFAAGYLARPVGGIIIAHYGDVIGRKRMFTLSIFLMAVPTLVIGLLPTY
ASIGVAAPILLLLMRTLQGAAIGGEMPGAWVFVAEHVPANRYSFGVGSLTAGITGGILLG
SLMGIFINSAFEPAEVAGYAWRIPFILGGVFGLVSVYLRRYLEETPVFRELAARRKEANE
LPLKTVLREHRAASVLTAGMTWCLSGAVVVVILMTPSYLQTVHHLSPKLVMQANCAGTLM
LTIGCLAIGWLCDRIGTRASMIIGWGGLGLSTWWFYGQLPGSPESLVWGYALVGLFVGSI
SLTPIVSTRAFPPPVRFTGLSFAYNMAYAVFGGLTPVLISLWIKADPQGPALYVIGLSIL
GVLLAFVPMSSKGYRA