Protein Info for HSERO_RS18650 in Herbaspirillum seropedicae SmR1

Annotation: histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1503 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 307 to 327 (21 residues), see Phobius details PF03924: CHASE" amino acids 74 to 257 (184 residues), 139.3 bits, see alignment E=7e-44 TIGR00229: PAS domain S-box protein" amino acids 339 to 456 (118 residues), 25.8 bits, see alignment E=5e-10 amino acids 629 to 728 (100 residues), 34 bits, see alignment 1.4e-12 amino acids 737 to 862 (126 residues), 24.6 bits, see alignment E=1.1e-09 PF08448: PAS_4" amino acids 347 to 450 (104 residues), 40 bits, see alignment 2.1e-13 amino acids 485 to 591 (107 residues), 46.1 bits, see alignment 2.6e-15 PF00989: PAS" amino acids 629 to 668 (40 residues), 23.4 bits, see alignment (E = 2.6e-08) PF13426: PAS_9" amino acids 631 to 721 (91 residues), 26.5 bits, see alignment 3.3e-09 PF08447: PAS_3" amino acids 759 to 849 (91 residues), 52.1 bits, see alignment 3.3e-17 PF00512: HisKA" amino acids 875 to 939 (65 residues), 70.2 bits, see alignment (E = 6.1e-23) PF02518: HATPase_c" amino acids 987 to 1102 (116 residues), 101.7 bits, see alignment 1.7e-32 PF00072: Response_reg" amino acids 1153 to 1263 (111 residues), 89 bits, see alignment 1.2e-28 PF01627: Hpt" amino acids 1322 to 1401 (80 residues), 26 bits, see alignment 4.6e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3735)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IR87 at UniProt or InterPro

Protein Sequence (1503 amino acids)

>HSERO_RS18650 histidine kinase (Herbaspirillum seropedicae SmR1)
MTRVTRNTVVFLLITLLFMLAGAATVRYLNERELHDSLAVDSRWIGDDIESLLRRYEHGL
RGERGAILAIGEHALTRERLLRYMDSRDLATEFPWAGGFGFIRHVPLSARAAYEQQVRQG
RMLFPSITQLAENPGELYVIEYIEPIEANRKALGLDIASSQARRSAADHAMLTGRAELTP
PIHLVQKDGASANAYLFLLPIYAGSVTPPTLHERQEKIIGWAYAPLSVHDIISELSRRWK
THALEVLIKDAAADGDNVELFRSDGFDALAQDSGLDSALSLYGRTWKLQLRPSTDYRQTH
QFVSDRAMLLSCGSLLVLALVIALAYQTYSRREEKLQQAQALLAAVVDSSPDAIVTTDAL
GRISSWNRGAADYLPSSPAQALNTPLAQHPDLRELDARAASDASGQTTPHIVSLHGAPVR
YASAQVFALHDRAGRAVGKAFMLRDITHEKNIERQLQRINEELEWTVQQRTQALHQAKTM
LQTVLNVMPSLVAYWDRHLINHFANAAYERAFQREAGQLNGVYMPDLVGPALFEKALPHI
KGVLAGAQQTFERSVDDPVLGARHMLTTYIPEIGDLGEVTGFYVVAHDVTEITHNRNQLS
ETLAQNQSLLDQVQDANTLLNNVLSSAKGVAIIATDTEGLVTLFNSGAEQMLGYRAEDVV
GKLKEEHFSSRPEAALPGQDSHTELLYRRHDGATLPVARQQTSMFDHRQRHLGYLYIALD
VSLQRQQASALAAARDQLVLAAEVAKLGVWVWDKDSDVLEYNPQVAEIYGFGDRGGAPRV
STYADWRRRVHPDDVDYVEKTLRAGLAVDGDHEPVFRVVRDDGGIRYVQARAYVQRDGAG
RPVRVICINLDITQRIEFENNLVDARLKAEQANSAKSLFLASVSHEIRTPMNGVLGMIQL
LQRTQPLPAQQDYLDKAEISAKSLLNLLNDLLDFSKMDAKQLQLDLQAFELERFGHNLAA
VLAGSPPQAGVSLHIALDPQLPRRLVGDAHRLQQVLVNLTGNALKFTHQGHIDVHFTRLD
PLPGRTVALRVEVSDTGIGIAADRLDDIFDAFTQAEASTTRRYGGTGLGLAISKHLVGLM
GGQLQVSSEPGRGSRFWFDLQLAVDDDSVLGPAAADDAARPQPLQAASHTAGSRAPETAR
SAPDAQCLQGVQILLVEDNPVNRQVASELLALSGAQVTCADSGSMGVAMACDPARHFDLV
LMDLQMPGMDGIEATRRIRGQYELRGLPILAMTANASPEDKQRCIEAGMAGHIAKPIDIA
TLIPVLLAHLHHERPVPEAAPQAVPQDLADDRLSVEDYSSILHRFQQASDIYRTTLDAAG
PELERLLAQYCAALAMSPEQAQEAMAALAQASHALRGVTATIGARGLAAYFGALEQRCRQ
AMAGRTPDLDWLERCRTEMDACQHDAMLVRQRLVMQALRPPASDAGPAAAALATVAASDF
PDRQRLRELLLSNNLEALDLIETLGKRHGLTQQEPYRQLNRLIEKLDFAAALTCLDHHFG
DAT