Protein Info for HSERO_RS18015 in Herbaspirillum seropedicae SmR1

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 TIGR00281: segregation and condensation protein B" amino acids 7 to 189 (183 residues), 109 bits, see alignment E=1.1e-35 PF04079: SMC_ScpB" amino acids 9 to 174 (166 residues), 157 bits, see alignment E=1.6e-50

Best Hits

KEGG orthology group: K06024, segregation and condensation protein B (inferred from 100% identity to hse:Hsero_3608)

Predicted SEED Role

"Segregation and condensation protein B" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IQH4 at UniProt or InterPro

Protein Sequence (354 amino acids)

>HSERO_RS18015 transcriptional regulator (Herbaspirillum seropedicae SmR1)
MNIAEAKKVLETALLCTHEPLSINDLKKLYVDPESEESSDINAEMIRQMLDELRTEWADK
GVEVVSLSTGWRFQSRKEMKVYLERLNPEKPPRYTRATLETLAIIAYRQPVTRGDIEDIR
GVAVNSQTIKMLEERGWIESIGHRDVPGRPALFATTRKFLDDLGLSALEELPPLQQVSGE
AAAQGALLELQALESGVAALAEQEQGQEQGQEQERPADEQSGEDDQSAQAPQDEAELQDS
AATQATESAEATPSPETVDQALAEVNAAEQEAVGQAEAADVHGDEDAAAAAPSEADDSAQ
THEPFEQDLAVTGTDAIEAADAEATGEHNDTTERAEEREDDARPPHQDSKNEAN