Protein Info for HSERO_RS17865 in Herbaspirillum seropedicae SmR1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 603 PF13432: TPR_16" amino acids 12 to 74 (63 residues), 22.9 bits, see alignment E=7.7e-08 amino acids 51 to 102 (52 residues), 19.9 bits, see alignment 6.5e-07 amino acids 114 to 176 (63 residues), 30.3 bits, see alignment E=3.7e-10 amino acids 160 to 209 (50 residues), 21.9 bits, see alignment 1.6e-07 amino acids 190 to 246 (57 residues), 28.4 bits, see alignment 1.4e-09 amino acids 218 to 279 (62 residues), 32.2 bits, see alignment E=9.3e-11 PF13181: TPR_8" amino acids 43 to 75 (33 residues), 13.2 bits, see alignment (E = 6.4e-05) amino acids 111 to 143 (33 residues), 15.3 bits, see alignment (E = 1.3e-05) amino acids 144 to 176 (33 residues), 13 bits, see alignment (E = 7.6e-05) amino acids 179 to 210 (32 residues), 21.3 bits, see alignment (E = 1.6e-07) amino acids 214 to 243 (30 residues), 13.1 bits, see alignment (E = 6.8e-05) amino acids 247 to 278 (32 residues), 19.3 bits, see alignment (E = 7.1e-07) PF13428: TPR_14" amino acids 111 to 151 (41 residues), 25.5 bits, see alignment 1.1e-08 PF07719: TPR_2" amino acids 111 to 143 (33 residues), 23.9 bits, see alignment (E = 2.2e-08) amino acids 179 to 210 (32 residues), 26.2 bits, see alignment (E = 4.4e-09) amino acids 213 to 243 (31 residues), 25.5 bits, see alignment (E = 7e-09) PF13414: TPR_11" amino acids 117 to 155 (39 residues), 31.9 bits, see alignment 6.4e-11 amino acids 185 to 225 (41 residues), 33.2 bits, see alignment 2.6e-11 PF14559: TPR_19" amino acids 157 to 210 (54 residues), 27.7 bits, see alignment 2.1e-09 PF00515: TPR_1" amino acids 179 to 211 (33 residues), 33.6 bits, see alignment (E = 1.8e-11) amino acids 213 to 243 (31 residues), 28.1 bits, see alignment (E = 1e-09) PF13176: TPR_7" amino acids 180 to 207 (28 residues), 14 bits, see alignment (E = 3.4e-05)

Best Hits

KEGG orthology group: None (inferred from 100% identity to hse:Hsero_3579)

Predicted SEED Role

"FOG: TPR repeat"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See D8IQE6 at UniProt or InterPro

Protein Sequence (603 amino acids)

>HSERO_RS17865 hypothetical protein (Herbaspirillum seropedicae SmR1)
MRQQANANQILLQKALALHQKGQLAPAEELYKKVLVKLPRHFEANYLYGMLKLHQEDWET
AEAQLAKAIELNPDHLDTYFDHAGALAHLGRDDEAVARYDLVLTVNADFVEALLARGAAL
RRLGRNREALADLERATALAPDNADAWFQRGNVLHDSYAYGDARESYERAVALRPDFIEA
WFNLGNTCKDGNQLDQALRAYDRALEVQPDFFEAISNRGYVLFKMQRPAEALQAYDRALA
LDERAPDLWFNRGSTLEQLYRFEEASESYRRAKALKPDAGSATWNEALMQLRQGDFVNGW
KGFETRWATEQMRGQQRQFMQPLWLGEQPLEGKTILLHAEQGFGDTLQFVRYAPLLAARG
ARVILEVQPALTRQLAGLPGVTQVIGTDHFMRPPFDFHCPLMSLPLACKTFSEADIPRAP
YLLPEASSWAAWHQRLPRNRALRVGLVWAGSSAQTHPDAVRIDGERSLPFATLAPLVELA
REHAALEFYSLQVGQDAVAQLHAHPLASLVRDCSPELHDFAETGALLANLDLLITVDTSV
CHLAGALGRPVWLLNRHNGCWRWQVEREDSPWYGGMTIFGQRTAGQWDEVIARVRAALQQ
QLA